Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS17085 and ABIE51_RS17090 are separated by 119 nucleotides ABIE51_RS17090 and ABIE51_RS17095 are separated by 119 nucleotides ABIE51_RS17095 and ABIE51_RS17100 are separated by 225 nucleotides ABIE51_RS17100 and ABIE51_RS17105 are separated by 82 nucleotides
ABIE51_RS17085: ABIE51_RS17085 - DUF2339 domain-containing protein, at 3,723,040 to 3,725,733
_RS17085
ABIE51_RS17090: ABIE51_RS17090 - group III truncated hemoglobin, at 3,725,853 to 3,726,281
_RS17090
ABIE51_RS17095: ABIE51_RS17095 - type I glyceraldehyde-3-phosphate dehydrogenase, at 3,726,401 to 3,727,402
_RS17095
ABIE51_RS17100: ABIE51_RS17100 - OmpW family outer membrane protein, at 3,727,628 to 3,728,251
_RS17100
ABIE51_RS17105: ABIE51_RS17105 - S1/P1 nuclease, at 3,728,334 to 3,729,134
_RS17105
Position (kb) 3726
3727
3728 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 3725.662 kb on + strand at 3725.911 kb on + strand, within ABIE51_RS17090 at 3725.923 kb on + strand, within ABIE51_RS17090 at 3725.924 kb on - strand, within ABIE51_RS17090 at 3725.942 kb on - strand, within ABIE51_RS17090 at 3726.074 kb on - strand, within ABIE51_RS17090 at 3726.196 kb on + strand, within ABIE51_RS17090 at 3726.196 kb on + strand, within ABIE51_RS17090 at 3726.196 kb on + strand, within ABIE51_RS17090 at 3726.196 kb on + strand, within ABIE51_RS17090 at 3726.197 kb on - strand, within ABIE51_RS17090 at 3726.197 kb on - strand, within ABIE51_RS17090 at 3726.197 kb on - strand, within ABIE51_RS17090 at 3726.197 kb on - strand, within ABIE51_RS17090 at 3726.289 kb on + strand at 3726.289 kb on + strand at 3726.289 kb on + strand at 3726.289 kb on + strand at 3726.290 kb on - strand at 3726.290 kb on - strand at 3726.290 kb on - strand at 3726.290 kb on - strand at 3726.290 kb on - strand at 3726.290 kb on - strand at 3726.290 kb on - strand at 3726.402 kb on + strand at 3726.402 kb on + strand at 3726.403 kb on - strand at 3726.403 kb on - strand at 3726.445 kb on - strand at 3726.445 kb on - strand at 3726.445 kb on - strand at 3726.462 kb on + strand at 3726.462 kb on + strand at 3726.463 kb on - strand at 3726.529 kb on + strand, within ABIE51_RS17095 at 3726.639 kb on + strand, within ABIE51_RS17095 at 3726.639 kb on + strand, within ABIE51_RS17095 at 3726.639 kb on + strand, within ABIE51_RS17095 at 3726.639 kb on + strand, within ABIE51_RS17095 at 3726.640 kb on - strand, within ABIE51_RS17095 at 3726.981 kb on + strand, within ABIE51_RS17095 at 3726.981 kb on + strand, within ABIE51_RS17095 at 3726.981 kb on + strand, within ABIE51_RS17095 at 3726.981 kb on + strand, within ABIE51_RS17095 at 3726.981 kb on + strand, within ABIE51_RS17095 at 3726.981 kb on + strand, within ABIE51_RS17095 at 3726.982 kb on - strand, within ABIE51_RS17095 at 3726.982 kb on - strand, within ABIE51_RS17095 at 3726.982 kb on - strand, within ABIE51_RS17095 at 3726.982 kb on - strand, within ABIE51_RS17095 at 3726.982 kb on - strand, within ABIE51_RS17095 at 3726.982 kb on - strand, within ABIE51_RS17095 at 3726.982 kb on - strand, within ABIE51_RS17095 at 3726.982 kb on - strand, within ABIE51_RS17095 at 3726.982 kb on - strand, within ABIE51_RS17095 at 3727.002 kb on + strand, within ABIE51_RS17095 at 3727.257 kb on + strand, within ABIE51_RS17095 at 3727.257 kb on + strand, within ABIE51_RS17095 at 3727.258 kb on - strand, within ABIE51_RS17095 at 3727.269 kb on + strand, within ABIE51_RS17095 at 3727.269 kb on + strand, within ABIE51_RS17095 at 3727.269 kb on + strand, within ABIE51_RS17095 at 3727.269 kb on + strand, within ABIE51_RS17095 at 3727.269 kb on + strand, within ABIE51_RS17095 at 3727.269 kb on + strand, within ABIE51_RS17095 at 3727.269 kb on + strand, within ABIE51_RS17095 at 3727.269 kb on + strand, within ABIE51_RS17095 at 3727.269 kb on + strand, within ABIE51_RS17095 at 3727.269 kb on + strand, within ABIE51_RS17095 at 3727.270 kb on - strand, within ABIE51_RS17095 at 3727.270 kb on - strand, within ABIE51_RS17095 at 3727.270 kb on - strand, within ABIE51_RS17095 at 3727.270 kb on - strand, within ABIE51_RS17095 at 3727.270 kb on - strand, within ABIE51_RS17095 at 3727.270 kb on - strand, within ABIE51_RS17095 at 3727.270 kb on - strand, within ABIE51_RS17095 at 3727.270 kb on - strand, within ABIE51_RS17095 at 3727.270 kb on - strand, within ABIE51_RS17095 at 3727.270 kb on - strand, within ABIE51_RS17095 at 3727.270 kb on - strand, within ABIE51_RS17095 at 3727.270 kb on - strand, within ABIE51_RS17095 at 3727.278 kb on + strand, within ABIE51_RS17095 at 3727.278 kb on + strand, within ABIE51_RS17095 at 3727.279 kb on - strand, within ABIE51_RS17095 at 3727.279 kb on - strand, within ABIE51_RS17095 at 3727.279 kb on - strand, within ABIE51_RS17095 at 3727.500 kb on + strand at 3727.500 kb on + strand at 3727.500 kb on + strand at 3727.500 kb on + strand at 3727.501 kb on - strand at 3727.501 kb on - strand at 3727.501 kb on - strand at 3727.829 kb on + strand, within ABIE51_RS17100 at 3727.830 kb on - strand, within ABIE51_RS17100 at 3727.956 kb on - strand, within ABIE51_RS17100 at 3728.009 kb on + strand, within ABIE51_RS17100 at 3728.009 kb on + strand, within ABIE51_RS17100 at 3728.009 kb on + strand, within ABIE51_RS17100 at 3728.010 kb on - strand, within ABIE51_RS17100 at 3728.010 kb on - strand, within ABIE51_RS17100 at 3728.222 kb on + strand at 3728.234 kb on + strand at 3728.234 kb on + strand at 3728.234 kb on + strand at 3728.234 kb on + strand at 3728.235 kb on - strand at 3728.235 kb on - strand at 3728.235 kb on - strand at 3728.252 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 3,725,662 + -0.1 3,725,911 + ABIE51_RS17090 0.14 -0.4 3,725,923 + ABIE51_RS17090 0.16 -0.2 3,725,924 - ABIE51_RS17090 0.17 +0.4 3,725,942 - ABIE51_RS17090 0.21 +0.6 3,726,074 - ABIE51_RS17090 0.52 -0.9 3,726,196 + ABIE51_RS17090 0.80 +0.6 3,726,196 + ABIE51_RS17090 0.80 -0.4 3,726,196 + ABIE51_RS17090 0.80 +1.2 3,726,196 + ABIE51_RS17090 0.80 +0.5 3,726,197 - ABIE51_RS17090 0.80 +0.7 3,726,197 - ABIE51_RS17090 0.80 +0.6 3,726,197 - ABIE51_RS17090 0.80 +0.3 3,726,197 - ABIE51_RS17090 0.80 +0.4 3,726,289 + -0.3 3,726,289 + +0.5 3,726,289 + +0.0 3,726,289 + -0.3 3,726,290 - -0.4 3,726,290 - -1.4 3,726,290 - -0.2 3,726,290 - -0.5 3,726,290 - +0.1 3,726,290 - -0.2 3,726,290 - -0.5 3,726,402 + -0.4 3,726,402 + +0.1 3,726,403 - +0.1 3,726,403 - -0.6 3,726,445 - -4.5 3,726,445 - -2.7 3,726,445 - -4.6 3,726,462 + +0.1 3,726,462 + -1.7 3,726,463 - -1.9 3,726,529 + ABIE51_RS17095 0.13 -3.0 3,726,639 + ABIE51_RS17095 0.24 -1.8 3,726,639 + ABIE51_RS17095 0.24 -2.3 3,726,639 + ABIE51_RS17095 0.24 -2.5 3,726,639 + ABIE51_RS17095 0.24 -3.6 3,726,640 - ABIE51_RS17095 0.24 -4.9 3,726,981 + ABIE51_RS17095 0.58 -3.0 3,726,981 + ABIE51_RS17095 0.58 -2.8 3,726,981 + ABIE51_RS17095 0.58 -1.6 3,726,981 + ABIE51_RS17095 0.58 -3.2 3,726,981 + ABIE51_RS17095 0.58 -2.7 3,726,981 + ABIE51_RS17095 0.58 -2.9 3,726,982 - ABIE51_RS17095 0.58 -0.9 3,726,982 - ABIE51_RS17095 0.58 -4.8 3,726,982 - ABIE51_RS17095 0.58 -2.5 3,726,982 - ABIE51_RS17095 0.58 -2.8 3,726,982 - ABIE51_RS17095 0.58 -2.9 3,726,982 - ABIE51_RS17095 0.58 -1.5 3,726,982 - ABIE51_RS17095 0.58 +0.1 3,726,982 - ABIE51_RS17095 0.58 -2.3 3,726,982 - ABIE51_RS17095 0.58 -1.9 3,727,002 + ABIE51_RS17095 0.60 -3.1 3,727,257 + ABIE51_RS17095 0.85 -1.5 3,727,257 + ABIE51_RS17095 0.85 -0.9 3,727,258 - ABIE51_RS17095 0.86 -3.0 3,727,269 + ABIE51_RS17095 0.87 -2.6 3,727,269 + ABIE51_RS17095 0.87 -2.8 3,727,269 + ABIE51_RS17095 0.87 -1.7 3,727,269 + ABIE51_RS17095 0.87 -2.8 3,727,269 + ABIE51_RS17095 0.87 -2.3 3,727,269 + ABIE51_RS17095 0.87 -2.2 3,727,269 + ABIE51_RS17095 0.87 -3.1 3,727,269 + ABIE51_RS17095 0.87 -3.3 3,727,269 + ABIE51_RS17095 0.87 -0.9 3,727,269 + ABIE51_RS17095 0.87 -3.3 3,727,270 - ABIE51_RS17095 0.87 -2.3 3,727,270 - ABIE51_RS17095 0.87 -2.0 3,727,270 - ABIE51_RS17095 0.87 -3.9 3,727,270 - ABIE51_RS17095 0.87 -2.3 3,727,270 - ABIE51_RS17095 0.87 -2.3 3,727,270 - ABIE51_RS17095 0.87 -1.9 3,727,270 - ABIE51_RS17095 0.87 -1.8 3,727,270 - ABIE51_RS17095 0.87 -2.7 3,727,270 - ABIE51_RS17095 0.87 -3.3 3,727,270 - ABIE51_RS17095 0.87 -4.6 3,727,270 - ABIE51_RS17095 0.87 -2.3 3,727,270 - ABIE51_RS17095 0.87 -4.0 3,727,278 + ABIE51_RS17095 0.88 -3.5 3,727,278 + ABIE51_RS17095 0.88 -1.8 3,727,279 - ABIE51_RS17095 0.88 -3.5 3,727,279 - ABIE51_RS17095 0.88 -2.8 3,727,279 - ABIE51_RS17095 0.88 -2.5 3,727,500 + +0.3 3,727,500 + +1.6 3,727,500 + -0.1 3,727,500 + -0.2 3,727,501 - +1.0 3,727,501 - +0.1 3,727,501 - -0.3 3,727,829 + ABIE51_RS17100 0.32 -0.4 3,727,830 - ABIE51_RS17100 0.32 -0.1 3,727,956 - ABIE51_RS17100 0.53 -0.0 3,728,009 + ABIE51_RS17100 0.61 -0.2 3,728,009 + ABIE51_RS17100 0.61 -0.3 3,728,009 + ABIE51_RS17100 0.61 +0.6 3,728,010 - ABIE51_RS17100 0.61 -0.1 3,728,010 - ABIE51_RS17100 0.61 -0.3 3,728,222 + +0.2 3,728,234 + +0.1 3,728,234 + -0.1 3,728,234 + +0.5 3,728,234 + +0.2 3,728,235 - +2.4 3,728,235 - +0.1 3,728,235 - -0.5 3,728,252 + +0.4
Or see this region's nucleotide sequence