Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS16320

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
3,545,741	-		ABIE51_RS16315	0.49	+0.0
3,545,887	+		ABIE51_RS16315	0.57	+0.3
3,545,887	+		ABIE51_RS16315	0.57	-0.6
3,545,887	+		ABIE51_RS16315	0.57	-0.3
3,545,888	-		ABIE51_RS16315	0.57	-0.6
3,545,888	-		ABIE51_RS16315	0.57	-0.3
3,545,888	-		ABIE51_RS16315	0.57	+0.2
3,545,888	-		ABIE51_RS16315	0.57	+0.6
3,545,888	-		ABIE51_RS16315	0.57	-1.2
3,545,888	-		ABIE51_RS16315	0.57	+0.2
3,546,193	+		ABIE51_RS16315	0.74	+0.0
3,546,193	+		ABIE51_RS16315	0.74	+0.3
3,546,194	-		ABIE51_RS16315	0.74	-0.0
3,546,194	-		ABIE51_RS16315	0.74	-0.2
3,546,268	+		ABIE51_RS16315	0.78	-0.5
3,546,268	+		ABIE51_RS16315	0.78	-0.4
3,546,268	+		ABIE51_RS16315	0.78	-0.2
3,546,268	+		ABIE51_RS16315	0.78	-1.3
3,546,268	+		ABIE51_RS16315	0.78	+0.2
3,546,268	+		ABIE51_RS16315	0.78	+0.0
3,546,268	+		ABIE51_RS16315	0.78	-0.2
3,546,268	+		ABIE51_RS16315	0.78	+1.0
3,546,269	-		ABIE51_RS16315	0.78	+0.6
3,546,269	-		ABIE51_RS16315	0.78	+0.2
3,546,269	-		ABIE51_RS16315	0.78	-0.1
3,546,269	-		ABIE51_RS16315	0.78	+1.0
3,546,436	+		ABIE51_RS16315	0.87	-0.2
3,546,436	+		ABIE51_RS16315	0.87	+0.3
3,546,436	+		ABIE51_RS16315	0.87	+0.0
3,546,436	+		ABIE51_RS16315	0.87	+0.9
3,546,436	+		ABIE51_RS16315	0.87	+0.8
3,546,436	+		ABIE51_RS16315	0.87	+0.3
3,546,436	+		ABIE51_RS16315	0.87	+0.0
3,546,437	-		ABIE51_RS16315	0.87	+0.2
3,546,437	-		ABIE51_RS16315	0.87	+0.2
3,546,674	+				+0.6
3,546,674	+				+0.5
3,546,674	+				-0.2
3,546,675	-				-0.1
3,546,675	-				+0.4
3,546,675	-				-0.1
3,546,675	-				+0.0
3,546,675	-				-1.2
3,546,697	-				+0.3
3,546,763	+				+1.0
3,546,764	-				-0.8
3,546,764	-				-1.6
3,546,764	-				-2.0
3,546,832	+		ABIE51_RS16320	0.16	-2.6
3,546,832	+		ABIE51_RS16320	0.16	-1.7
3,546,832	+		ABIE51_RS16320	0.16	-1.0
3,546,833	-		ABIE51_RS16320	0.17	-1.4
3,546,833	-		ABIE51_RS16320	0.17	-0.3
3,546,833	-		ABIE51_RS16320	0.17	-1.1
3,546,841	+		ABIE51_RS16320	0.18	-3.0
3,546,841	+		ABIE51_RS16320	0.18	-0.7
3,546,841	+		ABIE51_RS16320	0.18	-1.1
3,546,841	+		ABIE51_RS16320	0.18	-1.4
3,546,841	+		ABIE51_RS16320	0.18	-2.0
3,546,842	-		ABIE51_RS16320	0.18	-1.7
3,546,842	-		ABIE51_RS16320	0.18	-0.7
3,546,842	-		ABIE51_RS16320	0.18	-2.7
3,546,842	-		ABIE51_RS16320	0.18	-2.7
3,546,842	-		ABIE51_RS16320	0.18	-1.6
3,546,911	-		ABIE51_RS16320	0.28	-0.6
3,546,911	-		ABIE51_RS16320	0.28	-3.6
3,546,988	+		ABIE51_RS16320	0.40	-1.2
3,546,988	+		ABIE51_RS16320	0.40	-1.1
3,546,988	+		ABIE51_RS16320	0.40	-1.8
3,546,989	-		ABIE51_RS16320	0.40	-3.0
3,547,156	+		ABIE51_RS16320	0.65	-0.8
3,547,156	+		ABIE51_RS16320	0.65	-1.6
3,547,156	+		ABIE51_RS16320	0.65	-2.0
3,547,156	+		ABIE51_RS16320	0.65	-1.2
3,547,156	+		ABIE51_RS16320	0.65	-1.6
3,547,157	-		ABIE51_RS16320	0.65	-1.0
3,547,157	-		ABIE51_RS16320	0.65	-1.3
3,547,423	+				+0.2
3,547,423	+				-0.2
3,547,423	+				+0.2
3,547,424	-				-0.4
3,547,424	-				-0.8
3,547,424	-				-0.3
3,547,493	+				+0.7
3,547,494	-				+0.4
3,547,494	-				-0.2
3,547,494	-				-0.4
3,547,616	+				+0.2
3,547,616	+				-0.2
3,547,616	+				+0.2
3,547,616	+				+1.2
3,547,616	+				+0.1
3,547,616	+				+0.2
3,547,617	-				+0.2
3,547,617	-				-0.1
3,547,617	-				-1.4
3,547,617	-				-0.6
3,547,617	-				+0.8
3,547,617	-				-0.3
3,547,617	-				-0.6
3,547,617	-				-0.5
3,547,622	+				+1.6
3,547,622	+				-0.5
3,547,622	+				+0.1
3,547,622	+				+1.3
3,547,622	+				-0.2
3,547,623	-				+0.0
3,547,623	-				+1.3
3,547,623	-				-0.1
3,547,625	+				+0.2
3,547,625	+				-0.4
3,547,625	+				+0.1
3,547,625	+				+0.3
3,547,625	+				+0.1
3,547,625	+				+0.0
3,547,625	+				+0.8
3,547,625	+				+0.4
3,547,625	+				+0.0
3,547,625	+				+1.0
3,547,625	+				+1.5
3,547,625	+				-0.5
3,547,625	+				+0.4
3,547,625	+				+0.3
3,547,625	+				+0.0
3,547,625	+				-0.6
3,547,626	-				+0.1
3,547,626	-				-0.1
3,547,626	-				-0.2
3,547,626	-				+0.2
3,547,626	-				-0.1
3,547,626	-				+0.4
3,547,626	-				-0.4
3,547,626	-				-0.2
3,547,626	-				+0.0
3,547,626	-				-0.1
3,547,626	-				+0.2
3,547,626	-				+0.1
3,547,626	-				+0.0
3,547,629	+				+0.8
3,547,630	-				+0.1
3,547,712	+				+0.1
3,547,712	+				+0.4
3,547,895	+				+0.4
3,547,895	+				+0.4
3,547,896	-				-0.8
3,547,896	-				-0.6
3,547,896	-				+0.3
3,547,896	-				+0.3
3,547,896	-				+0.6
3,547,896	-				+0.1
3,548,186	+		ABIE51_RS16325	0.21	-0.1
3,548,186	+		ABIE51_RS16325	0.21	+0.3
3,548,187	-		ABIE51_RS16325	0.21	+0.4
3,548,315	+		ABIE51_RS16325	0.27	-0.3
3,548,316	-		ABIE51_RS16325	0.27	-0.4
3,548,316	-		ABIE51_RS16325	0.27	+1.4
3,548,316	-		ABIE51_RS16325	0.27	+0.1
3,548,316	-		ABIE51_RS16325	0.27	-2.6
3,548,342	+		ABIE51_RS16325	0.28	-0.1
3,548,342	+		ABIE51_RS16325	0.28	+0.6
3,548,342	+		ABIE51_RS16325	0.28	+0.1
3,548,342	+		ABIE51_RS16325	0.28	+0.4
3,548,342	+		ABIE51_RS16325	0.28	-0.1
3,548,343	-		ABIE51_RS16325	0.28	+0.1
3,548,343	-		ABIE51_RS16325	0.28	+0.4