Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS15990

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
3,461,747	+				-0.7
3,461,748	-				-0.3
3,461,748	-				+1.6
3,461,748	-				+0.0
3,461,911	+		ABIE51_RS15980	0.36	-0.9
3,461,911	+		ABIE51_RS15980	0.36	-0.9
3,461,911	+		ABIE51_RS15980	0.36	-0.4
3,461,912	-		ABIE51_RS15980	0.37	-0.1
3,461,912	-		ABIE51_RS15980	0.37	-0.4
3,461,912	-		ABIE51_RS15980	0.37	-0.3
3,462,094	+				+0.2
3,462,095	-				-0.6
3,462,405	+		ABIE51_RS15985	0.63	-0.4
3,462,429	+		ABIE51_RS15985	0.71	+0.0
3,462,429	+		ABIE51_RS15985	0.71	-0.4
3,462,429	+		ABIE51_RS15985	0.71	-0.0
3,462,430	-		ABIE51_RS15985	0.71	+0.3
3,462,695	+				-0.5
3,462,695	+				-1.1
3,462,695	+				-0.8
3,462,695	+				+0.6
3,462,695	+				+0.1
3,462,695	+				-0.4
3,462,696	-				+0.9
3,462,696	-				+0.2
3,463,019	+		ABIE51_RS15990	0.79	-3.4
3,463,019	+		ABIE51_RS15990	0.79	-1.6
3,463,020	-		ABIE51_RS15990	0.80	-1.6
3,463,020	-		ABIE51_RS15990	0.80	-1.1
3,463,538	+				-0.2
3,463,538	+				+0.1
3,463,539	-				-0.3
3,463,539	-				-0.1
3,463,539	-				+0.8
3,463,762	+		ABIE51_RS16000	0.17	+0.6
3,463,774	+		ABIE51_RS16000	0.18	+1.3
3,463,775	-		ABIE51_RS16000	0.18	+1.2
3,463,775	-		ABIE51_RS16000	0.18	+0.0
3,463,835	-		ABIE51_RS16000	0.22	+0.1