Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS15435

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
3,347,269	+				+0.4
3,347,270	-				-0.6
3,347,270	-				+0.1
3,347,270	-				+0.4
3,347,270	-				-0.9
3,347,322	+				+1.5
3,347,369	+				+1.6
3,347,369	+				-0.2
3,347,369	+				+0.4
3,347,369	+				-0.2
3,347,369	+				-1.0
3,347,370	-				+0.2
3,347,409	-				-0.5
3,347,425	+				+0.6
3,347,462	+				-0.2
3,347,463	-				-1.2
3,347,480	+				-2.3
3,347,480	+				-0.8
3,347,481	-				-1.5
3,347,481	-				-1.9
3,347,481	-				+0.7
3,347,565	-		ABIE51_RS15430	0.17	-1.0
3,347,565	-		ABIE51_RS15430	0.17	-2.6
3,347,789	+		ABIE51_RS15430	0.46	-1.6
3,347,790	-		ABIE51_RS15430	0.46	-2.1
3,347,804	+		ABIE51_RS15430	0.48	+0.3
3,347,804	+		ABIE51_RS15430	0.48	-2.3
3,347,804	+		ABIE51_RS15430	0.48	-1.5
3,347,804	+		ABIE51_RS15430	0.48	-3.0
3,347,804	+		ABIE51_RS15430	0.48	-1.8
3,347,805	-		ABIE51_RS15430	0.48	-1.0
3,347,805	-		ABIE51_RS15430	0.48	-0.4
3,347,805	-		ABIE51_RS15430	0.48	-0.9
3,347,805	-		ABIE51_RS15430	0.48	-1.5
3,347,810	+		ABIE51_RS15430	0.49	-1.3
3,347,810	+		ABIE51_RS15430	0.49	-2.3
3,347,810	+		ABIE51_RS15430	0.49	-1.6
3,347,810	+		ABIE51_RS15430	0.49	-2.2
3,347,810	+		ABIE51_RS15430	0.49	-2.8
3,347,811	-		ABIE51_RS15430	0.49	-2.3
3,347,811	-		ABIE51_RS15430	0.49	-2.7
3,347,811	-		ABIE51_RS15430	0.49	-2.2
3,347,811	-		ABIE51_RS15430	0.49	-1.7
3,347,811	-		ABIE51_RS15430	0.49	-2.4
3,347,811	-		ABIE51_RS15430	0.49	-1.2
3,347,996	+		ABIE51_RS15430	0.73	-1.1
3,348,005	+		ABIE51_RS15430	0.75	-0.9
3,348,005	+		ABIE51_RS15430	0.75	-1.5
3,348,006	-		ABIE51_RS15430	0.75	-1.0
3,348,006	-		ABIE51_RS15430	0.75	-0.8
3,348,006	-		ABIE51_RS15430	0.75	-2.4
3,348,006	-		ABIE51_RS15430	0.75	-0.6
3,348,006	-		ABIE51_RS15430	0.75	-1.0
3,348,006	-		ABIE51_RS15430	0.75	-1.8
3,348,032	+		ABIE51_RS15430	0.78	-2.0
3,348,033	-		ABIE51_RS15430	0.78	-1.4
3,348,033	-		ABIE51_RS15430	0.78	-0.8
3,348,278	-				+0.6
3,348,321	+				-1.6
3,348,321	+				-2.4
3,348,567	+		ABIE51_RS15435	0.26	-1.7
3,348,568	-		ABIE51_RS15435	0.26	-2.8
3,348,571	-		ABIE51_RS15435	0.27	-1.4
3,348,579	+		ABIE51_RS15435	0.27	-2.6
3,348,580	-		ABIE51_RS15435	0.27	-0.9
3,348,580	-		ABIE51_RS15435	0.27	-0.5
3,348,580	-		ABIE51_RS15435	0.27	-1.3
3,348,583	-		ABIE51_RS15435	0.28	-1.6
3,348,738	+		ABIE51_RS15435	0.40	-1.1
3,348,738	+		ABIE51_RS15435	0.40	-1.8
3,348,738	+		ABIE51_RS15435	0.40	-1.0
3,348,739	-		ABIE51_RS15435	0.40	-1.3
3,348,739	-		ABIE51_RS15435	0.40	+1.0
3,348,741	+		ABIE51_RS15435	0.40	-1.3
3,348,741	+		ABIE51_RS15435	0.40	-1.3
3,349,060	-		ABIE51_RS15435	0.65	-0.8
3,349,060	-		ABIE51_RS15435	0.65	-2.2
3,349,060	-		ABIE51_RS15435	0.65	-2.6
3,349,093	-		ABIE51_RS15435	0.68	-1.3
3,349,093	-		ABIE51_RS15435	0.68	-2.2
3,349,146	+		ABIE51_RS15435	0.72	-2.5
3,349,146	+		ABIE51_RS15435	0.72	-1.6
3,349,146	+		ABIE51_RS15435	0.72	-1.4
3,349,146	+		ABIE51_RS15435	0.72	-0.8
3,349,146	+		ABIE51_RS15435	0.72	-1.0
3,349,147	-		ABIE51_RS15435	0.72	-1.9
3,349,147	-		ABIE51_RS15435	0.72	-1.8
3,349,147	-		ABIE51_RS15435	0.72	-2.3
3,349,147	-		ABIE51_RS15435	0.72	-2.3
3,349,147	-		ABIE51_RS15435	0.72	-2.3
3,349,147	-		ABIE51_RS15435	0.72	-2.5
3,349,173	+		ABIE51_RS15435	0.74	-1.0
3,349,173	+		ABIE51_RS15435	0.74	-1.6
3,349,174	-		ABIE51_RS15435	0.74	-1.4
3,349,215	+		ABIE51_RS15435	0.78	-2.7
3,349,216	-		ABIE51_RS15435	0.78	-1.7
3,349,254	+		ABIE51_RS15435	0.81	-2.2
3,349,254	+		ABIE51_RS15435	0.81	-1.3
3,349,254	+		ABIE51_RS15435	0.81	-1.7
3,349,254	+		ABIE51_RS15435	0.81	-1.6
3,349,255	-		ABIE51_RS15435	0.81	-1.2
3,349,362	+		ABIE51_RS15435	0.89	-1.2
3,349,363	-		ABIE51_RS15435	0.89	-2.8
3,349,366	-		ABIE51_RS15435	0.90	-1.2
3,349,366	-		ABIE51_RS15435	0.90	-2.5
3,349,392	+				-0.7
3,349,392	+				-2.3
3,349,392	+				-2.8
3,349,393	-				-1.6
3,349,500	+				-1.0
3,349,501	-				-1.0
3,349,563	+		ABIE51_RS15440	0.10	-1.5
3,349,564	-		ABIE51_RS15440	0.10	-1.8
3,349,564	-		ABIE51_RS15440	0.10	-1.9
3,349,659	+		ABIE51_RS15440	0.26	-1.8
3,349,794	+		ABIE51_RS15440	0.47	-2.6
3,349,795	-		ABIE51_RS15440	0.47	-3.3
3,349,795	-		ABIE51_RS15440	0.47	-2.0
3,350,151	+				-1.6
3,350,209	-				-0.2
3,350,377	+				-0.3
3,350,377	+				-0.0
3,350,377	+				-0.2
3,350,377	+				+0.2
3,350,377	+				-0.8
3,350,377	+				-0.2
3,350,377	+				-0.3
3,350,377	+				-0.3
3,350,377	+				-0.5
3,350,378	-				-0.5
3,350,378	-				+0.1
3,350,378	-				+0.2
3,350,378	-				-0.8
3,350,378	-				-0.2
3,350,378	-				-0.2
3,350,378	-				+0.1
3,350,395	+				-0.2
3,350,414	-		ABIE51_RS15445	0.10	-0.1
3,350,414	-		ABIE51_RS15445	0.10	-0.6
3,350,414	-		ABIE51_RS15445	0.10	+0.5