Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04535 and ABIE51_RS04540 are separated by 19 nucleotides ABIE51_RS04540 and ABIE51_RS04545 overlap by 4 nucleotides ABIE51_RS04545 and ABIE51_RS04550 overlap by 4 nucleotides ABIE51_RS04550 and ABIE51_RS04555 overlap by 4 nucleotides ABIE51_RS04555 and ABIE51_RS04560 overlap by 4 nucleotides
ABIE51_RS04535: ABIE51_RS04535 - type II secretion system major pseudopilin GspG, at 982,701 to 983,135
_RS04535
ABIE51_RS04540: ABIE51_RS04540 - GspH/FimT family pseudopilin, at 983,155 to 983,607
_RS04540
ABIE51_RS04545: ABIE51_RS04545 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 983,604 to 984,122
_RS04545
ABIE51_RS04550: ABIE51_RS04550 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 984,119 to 984,790
_RS04550
ABIE51_RS04555: ABIE51_RS04555 - type II secretion system protein GspK, at 984,787 to 985,686
_RS04555
ABIE51_RS04560: ABIE51_RS04560 - PilN domain-containing protein, at 985,683 to 986,906
_RS04560
Position (kb) 984
985 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 983.128 kb on - strand at 983.128 kb on - strand at 983.134 kb on - strand at 983.134 kb on - strand at 983.503 kb on - strand, within ABIE51_RS04540 at 983.722 kb on - strand, within ABIE51_RS04545 at 983.847 kb on + strand, within ABIE51_RS04545 at 983.848 kb on - strand, within ABIE51_RS04545 at 983.848 kb on - strand, within ABIE51_RS04545 at 984.432 kb on - strand, within ABIE51_RS04550 at 984.432 kb on - strand, within ABIE51_RS04550 at 984.452 kb on + strand, within ABIE51_RS04550 at 984.452 kb on + strand, within ABIE51_RS04550 at 984.453 kb on - strand, within ABIE51_RS04550 at 984.979 kb on + strand, within ABIE51_RS04555 at 984.980 kb on - strand, within ABIE51_RS04555 at 985.258 kb on + strand, within ABIE51_RS04555 at 985.259 kb on - strand, within ABIE51_RS04555 at 985.259 kb on - strand, within ABIE51_RS04555 at 985.280 kb on - strand, within ABIE51_RS04555 at 985.351 kb on + strand, within ABIE51_RS04555 at 985.381 kb on + strand, within ABIE51_RS04555 at 985.381 kb on + strand, within ABIE51_RS04555 at 985.382 kb on - strand, within ABIE51_RS04555 at 985.411 kb on + strand, within ABIE51_RS04555 at 985.411 kb on + strand, within ABIE51_RS04555 at 985.411 kb on + strand, within ABIE51_RS04555 at 985.412 kb on - strand, within ABIE51_RS04555 at 985.412 kb on - strand, within ABIE51_RS04555 at 985.412 kb on - strand, within ABIE51_RS04555 at 985.549 kb on + strand, within ABIE51_RS04555 at 985.549 kb on + strand, within ABIE51_RS04555 at 985.549 kb on + strand, within ABIE51_RS04555 at 985.549 kb on + strand, within ABIE51_RS04555 at 985.549 kb on + strand, within ABIE51_RS04555 at 985.549 kb on + strand, within ABIE51_RS04555 at 985.549 kb on + strand, within ABIE51_RS04555 at 985.550 kb on - strand, within ABIE51_RS04555 at 985.550 kb on - strand, within ABIE51_RS04555 at 985.550 kb on - strand, within ABIE51_RS04555 at 985.550 kb on - strand, within ABIE51_RS04555 at 985.550 kb on - strand, within ABIE51_RS04555 at 985.550 kb on - strand, within ABIE51_RS04555 at 985.550 kb on - strand, within ABIE51_RS04555 at 985.550 kb on - strand, within ABIE51_RS04555 at 985.550 kb on - strand, within ABIE51_RS04555 at 985.550 kb on - strand, within ABIE51_RS04555 at 985.550 kb on - strand, within ABIE51_RS04555 at 985.550 kb on - strand, within ABIE51_RS04555 at 985.551 kb on + strand, within ABIE51_RS04555 at 985.551 kb on + strand, within ABIE51_RS04555 at 985.551 kb on + strand, within ABIE51_RS04555 at 985.551 kb on + strand, within ABIE51_RS04555 at 985.551 kb on + strand, within ABIE51_RS04555 at 985.552 kb on - strand, within ABIE51_RS04555 at 985.552 kb on - strand, within ABIE51_RS04555 at 985.552 kb on - strand, within ABIE51_RS04555 at 985.552 kb on - strand, within ABIE51_RS04555 at 985.552 kb on - strand, within ABIE51_RS04555 at 985.552 kb on - strand, within ABIE51_RS04555 at 985.555 kb on - strand, within ABIE51_RS04555 at 985.555 kb on - strand, within ABIE51_RS04555 at 985.555 kb on - strand, within ABIE51_RS04555 at 985.645 kb on + strand at 985.645 kb on + strand at 985.645 kb on + strand at 985.645 kb on + strand at 985.645 kb on + strand at 985.645 kb on + strand at 985.645 kb on + strand at 985.645 kb on + strand at 985.645 kb on + strand at 985.645 kb on + strand at 985.645 kb on + strand at 985.646 kb on - strand at 985.646 kb on - strand at 985.646 kb on - strand at 985.646 kb on - strand at 985.646 kb on - strand at 985.646 kb on - strand at 985.646 kb on - strand at 985.646 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 983,128 - +0.2 983,128 - +0.1 983,134 - +0.1 983,134 - -0.3 983,503 - ABIE51_RS04540 0.77 +0.1 983,722 - ABIE51_RS04545 0.23 -0.4 983,847 + ABIE51_RS04545 0.47 -1.6 983,848 - ABIE51_RS04545 0.47 +0.6 983,848 - ABIE51_RS04545 0.47 -0.7 984,432 - ABIE51_RS04550 0.47 -0.2 984,432 - ABIE51_RS04550 0.47 -2.8 984,452 + ABIE51_RS04550 0.50 -1.4 984,452 + ABIE51_RS04550 0.50 -1.2 984,453 - ABIE51_RS04550 0.50 -2.0 984,979 + ABIE51_RS04555 0.21 -1.1 984,980 - ABIE51_RS04555 0.21 -0.2 985,258 + ABIE51_RS04555 0.52 -0.3 985,259 - ABIE51_RS04555 0.52 -0.5 985,259 - ABIE51_RS04555 0.52 +0.8 985,280 - ABIE51_RS04555 0.55 -2.0 985,351 + ABIE51_RS04555 0.63 -1.8 985,381 + ABIE51_RS04555 0.66 -1.0 985,381 + ABIE51_RS04555 0.66 -1.1 985,382 - ABIE51_RS04555 0.66 +2.4 985,411 + ABIE51_RS04555 0.69 -0.7 985,411 + ABIE51_RS04555 0.69 -1.2 985,411 + ABIE51_RS04555 0.69 -1.1 985,412 - ABIE51_RS04555 0.69 -0.9 985,412 - ABIE51_RS04555 0.69 -1.0 985,412 - ABIE51_RS04555 0.69 -1.1 985,549 + ABIE51_RS04555 0.85 -1.8 985,549 + ABIE51_RS04555 0.85 -1.2 985,549 + ABIE51_RS04555 0.85 -1.4 985,549 + ABIE51_RS04555 0.85 -2.0 985,549 + ABIE51_RS04555 0.85 -0.7 985,549 + ABIE51_RS04555 0.85 -1.0 985,549 + ABIE51_RS04555 0.85 -1.4 985,550 - ABIE51_RS04555 0.85 +1.6 985,550 - ABIE51_RS04555 0.85 -1.0 985,550 - ABIE51_RS04555 0.85 -0.4 985,550 - ABIE51_RS04555 0.85 -1.0 985,550 - ABIE51_RS04555 0.85 -1.7 985,550 - ABIE51_RS04555 0.85 +0.5 985,550 - ABIE51_RS04555 0.85 -2.0 985,550 - ABIE51_RS04555 0.85 -1.0 985,550 - ABIE51_RS04555 0.85 +0.6 985,550 - ABIE51_RS04555 0.85 -1.2 985,550 - ABIE51_RS04555 0.85 -0.3 985,550 - ABIE51_RS04555 0.85 -0.6 985,551 + ABIE51_RS04555 0.85 -1.0 985,551 + ABIE51_RS04555 0.85 -0.6 985,551 + ABIE51_RS04555 0.85 -2.3 985,551 + ABIE51_RS04555 0.85 -1.5 985,551 + ABIE51_RS04555 0.85 -1.8 985,552 - ABIE51_RS04555 0.85 -1.4 985,552 - ABIE51_RS04555 0.85 -1.5 985,552 - ABIE51_RS04555 0.85 -0.6 985,552 - ABIE51_RS04555 0.85 -1.0 985,552 - ABIE51_RS04555 0.85 -0.7 985,552 - ABIE51_RS04555 0.85 -0.6 985,555 - ABIE51_RS04555 0.85 -1.0 985,555 - ABIE51_RS04555 0.85 -0.2 985,555 - ABIE51_RS04555 0.85 -0.4 985,645 + -0.2 985,645 + -2.5 985,645 + -2.0 985,645 + +0.0 985,645 + +0.0 985,645 + -1.4 985,645 + -0.4 985,645 + -1.2 985,645 + -1.0 985,645 + -1.3 985,645 + +0.0 985,646 - -1.1 985,646 - -1.3 985,646 - +0.0 985,646 - -0.1 985,646 - -1.2 985,646 - -1.0 985,646 - -0.6 985,646 - +0.0
Or see this region's nucleotide sequence