Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS02575

Experiment: Ying_all64 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS02565 and ABIE51_RS02570 are separated by 9 nucleotidesABIE51_RS02570 and ABIE51_RS02575 are separated by 233 nucleotidesABIE51_RS02575 and ABIE51_RS02580 overlap by 4 nucleotides ABIE51_RS02565: ABIE51_RS02565 - zinc-dependent alcohol dehydrogenase, at 567,345 to 568,514 _RS02565 ABIE51_RS02570: ABIE51_RS02570 - SRPBCC family protein, at 568,524 to 569,033 _RS02570 ABIE51_RS02575: ABIE51_RS02575 - HlyD family secretion protein, at 569,267 to 570,292 _RS02575 ABIE51_RS02580: ABIE51_RS02580 - MFS transporter, at 570,289 to 571,863 _RS02580 Position (kb) 569 570 571Strain fitness (log2 ratio) -1 0 1at 568.867 kb on - strand, within ABIE51_RS02570at 569.084 kb on + strandat 569.203 kb on + strandat 569.596 kb on - strand, within ABIE51_RS02575at 570.559 kb on + strand, within ABIE51_RS02580at 570.984 kb on - strand, within ABIE51_RS02580at 571.192 kb on + strand, within ABIE51_RS02580at 571.193 kb on - strand, within ABIE51_RS02580at 571.193 kb on - strand, within ABIE51_RS02580

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
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568,867 - ABIE51_RS02570 0.67 +1.6
569,084 + -0.1
569,203 + -0.8
569,596 - ABIE51_RS02575 0.32 -1.2
570,559 + ABIE51_RS02580 0.17 -0.3
570,984 - ABIE51_RS02580 0.44 +0.4
571,192 + ABIE51_RS02580 0.57 +0.2
571,193 - ABIE51_RS02580 0.57 +0.9
571,193 - ABIE51_RS02580 0.57 +0.2

Or see this region's nucleotide sequence