Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01365 and ABIE51_RS01370 are separated by 133 nucleotides ABIE51_RS01370 and ABIE51_RS01375 are separated by 18 nucleotides ABIE51_RS01375 and ABIE51_RS01380 are separated by 394 nucleotides
ABIE51_RS01365: ABIE51_RS01365 - ATP-binding protein, at 292,749 to 293,801
_RS01365
ABIE51_RS01370: ABIE51_RS01370 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 293,935 to 296,115
_RS01370
ABIE51_RS01375: ABIE51_RS01375 - nuclear transport factor 2 family protein, at 296,134 to 296,571
_RS01375
ABIE51_RS01380: ABIE51_RS01380 - hypothetical protein, at 296,966 to 297,283
_RS01380
Position (kb) 293
294
295
296
297 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 293.812 kb on + strand at 293.812 kb on + strand at 294.337 kb on + strand, within ABIE51_RS01370 at 294.337 kb on + strand, within ABIE51_RS01370 at 294.337 kb on + strand, within ABIE51_RS01370 at 294.338 kb on - strand, within ABIE51_RS01370 at 294.338 kb on - strand, within ABIE51_RS01370 at 294.511 kb on + strand, within ABIE51_RS01370 at 294.512 kb on - strand, within ABIE51_RS01370 at 294.538 kb on + strand, within ABIE51_RS01370 at 294.538 kb on + strand, within ABIE51_RS01370 at 294.539 kb on - strand, within ABIE51_RS01370 at 294.539 kb on - strand, within ABIE51_RS01370 at 294.736 kb on + strand, within ABIE51_RS01370 at 294.737 kb on - strand, within ABIE51_RS01370 at 294.737 kb on - strand, within ABIE51_RS01370 at 294.737 kb on - strand, within ABIE51_RS01370 at 294.769 kb on + strand, within ABIE51_RS01370 at 294.977 kb on + strand, within ABIE51_RS01370 at 294.977 kb on + strand, within ABIE51_RS01370 at 294.978 kb on - strand, within ABIE51_RS01370 at 295.184 kb on - strand, within ABIE51_RS01370 at 295.351 kb on + strand, within ABIE51_RS01370 at 295.352 kb on - strand, within ABIE51_RS01370 at 295.352 kb on - strand, within ABIE51_RS01370 at 295.352 kb on - strand, within ABIE51_RS01370 at 295.352 kb on - strand, within ABIE51_RS01370 at 295.573 kb on + strand, within ABIE51_RS01370 at 295.574 kb on - strand, within ABIE51_RS01370 at 295.630 kb on + strand, within ABIE51_RS01370 at 295.630 kb on + strand, within ABIE51_RS01370 at 295.631 kb on - strand, within ABIE51_RS01370 at 295.631 kb on - strand, within ABIE51_RS01370 at 295.636 kb on + strand, within ABIE51_RS01370 at 295.636 kb on + strand, within ABIE51_RS01370 at 295.636 kb on + strand, within ABIE51_RS01370 at 295.636 kb on + strand, within ABIE51_RS01370 at 295.636 kb on + strand, within ABIE51_RS01370 at 295.636 kb on + strand, within ABIE51_RS01370 at 295.637 kb on - strand, within ABIE51_RS01370 at 295.637 kb on - strand, within ABIE51_RS01370 at 295.637 kb on - strand, within ABIE51_RS01370 at 295.637 kb on - strand, within ABIE51_RS01370 at 295.637 kb on - strand, within ABIE51_RS01370 at 295.637 kb on - strand, within ABIE51_RS01370 at 295.637 kb on - strand, within ABIE51_RS01370 at 295.723 kb on + strand, within ABIE51_RS01370 at 295.723 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.747 kb on + strand, within ABIE51_RS01370 at 295.748 kb on - strand, within ABIE51_RS01370 at 295.873 kb on + strand, within ABIE51_RS01370 at 295.873 kb on + strand, within ABIE51_RS01370 at 295.873 kb on + strand, within ABIE51_RS01370 at 295.873 kb on + strand, within ABIE51_RS01370 at 295.873 kb on + strand, within ABIE51_RS01370 at 295.873 kb on + strand, within ABIE51_RS01370 at 295.873 kb on + strand, within ABIE51_RS01370 at 295.873 kb on + strand, within ABIE51_RS01370 at 295.874 kb on - strand, within ABIE51_RS01370 at 295.874 kb on - strand, within ABIE51_RS01370 at 295.874 kb on - strand, within ABIE51_RS01370 at 295.874 kb on - strand, within ABIE51_RS01370 at 295.874 kb on - strand, within ABIE51_RS01370 at 295.874 kb on - strand, within ABIE51_RS01370 at 295.875 kb on + strand, within ABIE51_RS01370 at 295.875 kb on + strand, within ABIE51_RS01370 at 295.875 kb on + strand, within ABIE51_RS01370 at 296.113 kb on + strand at 296.150 kb on + strand at 296.377 kb on - strand, within ABIE51_RS01375 at 296.377 kb on - strand, within ABIE51_RS01375 at 296.377 kb on - strand, within ABIE51_RS01375 at 296.463 kb on - strand, within ABIE51_RS01375 at 296.463 kb on - strand, within ABIE51_RS01375 at 296.585 kb on + strand at 296.585 kb on + strand at 296.585 kb on + strand at 296.586 kb on - strand at 296.586 kb on - strand at 296.665 kb on - strand at 296.728 kb on + strand at 296.729 kb on - strand at 296.900 kb on + strand at 296.900 kb on + strand at 296.900 kb on + strand at 296.900 kb on + strand at 296.900 kb on + strand at 296.900 kb on + strand at 296.967 kb on + strand at 296.967 kb on + strand at 296.967 kb on + strand at 296.967 kb on + strand at 296.967 kb on + strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.968 kb on - strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.969 kb on + strand at 296.970 kb on - strand at 297.021 kb on + strand, within ABIE51_RS01380 at 297.021 kb on + strand, within ABIE51_RS01380 at 297.021 kb on + strand, within ABIE51_RS01380 at 297.021 kb on + strand, within ABIE51_RS01380 at 297.021 kb on + strand, within ABIE51_RS01380 at 297.021 kb on + strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.022 kb on - strand, within ABIE51_RS01380 at 297.044 kb on + strand, within ABIE51_RS01380 at 297.044 kb on + strand, within ABIE51_RS01380 at 297.044 kb on + strand, within ABIE51_RS01380 at 297.057 kb on + strand, within ABIE51_RS01380 at 297.057 kb on + strand, within ABIE51_RS01380 at 297.058 kb on - strand, within ABIE51_RS01380 at 297.097 kb on + strand, within ABIE51_RS01380 at 297.097 kb on + strand, within ABIE51_RS01380 at 297.098 kb on - strand, within ABIE51_RS01380
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 293,812 + +0.0 293,812 + -0.1 294,337 + ABIE51_RS01370 0.18 -3.3 294,337 + ABIE51_RS01370 0.18 -3.8 294,337 + ABIE51_RS01370 0.18 -3.1 294,338 - ABIE51_RS01370 0.18 -3.4 294,338 - ABIE51_RS01370 0.18 -4.2 294,511 + ABIE51_RS01370 0.26 -2.4 294,512 - ABIE51_RS01370 0.26 -1.5 294,538 + ABIE51_RS01370 0.28 -4.5 294,538 + ABIE51_RS01370 0.28 -3.4 294,539 - ABIE51_RS01370 0.28 -3.1 294,539 - ABIE51_RS01370 0.28 -5.8 294,736 + ABIE51_RS01370 0.37 -4.7 294,737 - ABIE51_RS01370 0.37 -4.2 294,737 - ABIE51_RS01370 0.37 -3.2 294,737 - ABIE51_RS01370 0.37 -5.6 294,769 + ABIE51_RS01370 0.38 -3.2 294,977 + ABIE51_RS01370 0.48 -5.0 294,977 + ABIE51_RS01370 0.48 -3.2 294,978 - ABIE51_RS01370 0.48 -4.0 295,184 - ABIE51_RS01370 0.57 -4.7 295,351 + ABIE51_RS01370 0.65 -4.8 295,352 - ABIE51_RS01370 0.65 -4.1 295,352 - ABIE51_RS01370 0.65 -2.2 295,352 - ABIE51_RS01370 0.65 -3.4 295,352 - ABIE51_RS01370 0.65 -4.1 295,573 + ABIE51_RS01370 0.75 -3.8 295,574 - ABIE51_RS01370 0.75 +0.1 295,630 + ABIE51_RS01370 0.78 -4.6 295,630 + ABIE51_RS01370 0.78 -4.6 295,631 - ABIE51_RS01370 0.78 -0.5 295,631 - ABIE51_RS01370 0.78 -4.5 295,636 + ABIE51_RS01370 0.78 -4.8 295,636 + ABIE51_RS01370 0.78 -4.5 295,636 + ABIE51_RS01370 0.78 -4.8 295,636 + ABIE51_RS01370 0.78 -4.7 295,636 + ABIE51_RS01370 0.78 -4.7 295,636 + ABIE51_RS01370 0.78 -1.2 295,637 - ABIE51_RS01370 0.78 -4.3 295,637 - ABIE51_RS01370 0.78 -3.7 295,637 - ABIE51_RS01370 0.78 -2.5 295,637 - ABIE51_RS01370 0.78 -5.0 295,637 - ABIE51_RS01370 0.78 -5.2 295,637 - ABIE51_RS01370 0.78 -0.9 295,637 - ABIE51_RS01370 0.78 -3.9 295,723 + ABIE51_RS01370 0.82 -4.5 295,723 + ABIE51_RS01370 0.82 -2.5 295,747 + ABIE51_RS01370 0.83 -3.0 295,747 + ABIE51_RS01370 0.83 -4.1 295,747 + ABIE51_RS01370 0.83 -4.5 295,747 + ABIE51_RS01370 0.83 -2.2 295,747 + ABIE51_RS01370 0.83 -4.8 295,747 + ABIE51_RS01370 0.83 -3.0 295,747 + ABIE51_RS01370 0.83 -1.5 295,747 + ABIE51_RS01370 0.83 -3.9 295,747 + ABIE51_RS01370 0.83 -3.9 295,748 - ABIE51_RS01370 0.83 -4.3 295,873 + ABIE51_RS01370 0.89 -4.6 295,873 + ABIE51_RS01370 0.89 -3.1 295,873 + ABIE51_RS01370 0.89 -3.4 295,873 + ABIE51_RS01370 0.89 -4.1 295,873 + ABIE51_RS01370 0.89 -3.5 295,873 + ABIE51_RS01370 0.89 -6.0 295,873 + ABIE51_RS01370 0.89 -3.5 295,873 + ABIE51_RS01370 0.89 -3.1 295,874 - ABIE51_RS01370 0.89 -3.6 295,874 - ABIE51_RS01370 0.89 -2.5 295,874 - ABIE51_RS01370 0.89 -0.9 295,874 - ABIE51_RS01370 0.89 -4.7 295,874 - ABIE51_RS01370 0.89 -3.5 295,874 - ABIE51_RS01370 0.89 -3.6 295,875 + ABIE51_RS01370 0.89 -3.9 295,875 + ABIE51_RS01370 0.89 -3.6 295,875 + ABIE51_RS01370 0.89 -4.9 296,113 + -0.5 296,150 + +0.1 296,377 - ABIE51_RS01375 0.55 -0.1 296,377 - ABIE51_RS01375 0.55 +0.7 296,377 - ABIE51_RS01375 0.55 -0.0 296,463 - ABIE51_RS01375 0.75 +0.4 296,463 - ABIE51_RS01375 0.75 -0.3 296,585 + -0.1 296,585 + +0.5 296,585 + +0.3 296,586 - -0.5 296,586 - -0.3 296,665 - -0.2 296,728 + -0.2 296,729 - -0.2 296,900 + +0.3 296,900 + +0.1 296,900 + +0.5 296,900 + +0.5 296,900 + +0.1 296,900 + -1.5 296,967 + -0.5 296,967 + +0.6 296,967 + +0.2 296,967 + -0.0 296,967 + +0.3 296,968 - +0.2 296,968 - +0.1 296,968 - -0.0 296,968 - -0.2 296,968 - -0.5 296,968 - +0.3 296,968 - +0.4 296,968 - -0.4 296,969 + +0.9 296,969 + +0.2 296,969 + +0.5 296,969 + +0.3 296,969 + +0.9 296,969 + +0.0 296,969 + +0.3 296,970 - +0.0 297,021 + ABIE51_RS01380 0.17 -0.1 297,021 + ABIE51_RS01380 0.17 +0.1 297,021 + ABIE51_RS01380 0.17 -0.2 297,021 + ABIE51_RS01380 0.17 -0.3 297,021 + ABIE51_RS01380 0.17 +0.6 297,021 + ABIE51_RS01380 0.17 +0.2 297,022 - ABIE51_RS01380 0.18 -0.6 297,022 - ABIE51_RS01380 0.18 +2.0 297,022 - ABIE51_RS01380 0.18 +0.4 297,022 - ABIE51_RS01380 0.18 +0.6 297,022 - ABIE51_RS01380 0.18 +1.7 297,022 - ABIE51_RS01380 0.18 -0.4 297,022 - ABIE51_RS01380 0.18 +2.4 297,022 - ABIE51_RS01380 0.18 +1.6 297,044 + ABIE51_RS01380 0.25 +0.1 297,044 + ABIE51_RS01380 0.25 +0.7 297,044 + ABIE51_RS01380 0.25 +0.4 297,057 + ABIE51_RS01380 0.29 +0.6 297,057 + ABIE51_RS01380 0.29 +0.4 297,058 - ABIE51_RS01380 0.29 +0.1 297,097 + ABIE51_RS01380 0.41 -0.5 297,097 + ABIE51_RS01380 0.41 +0.5 297,098 - ABIE51_RS01380 0.42 -0.3
Or see this region's nucleotide sequence