Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS12290

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
2,651,734	-		ABIE51_RS12285	0.12	-0.4
2,651,867	+		ABIE51_RS12285	0.25	-0.9
2,651,868	-		ABIE51_RS12285	0.25	-0.2
2,651,868	-		ABIE51_RS12285	0.25	+0.4
2,652,497	+		ABIE51_RS12285	0.90	+0.8
2,652,498	-		ABIE51_RS12285	0.90	-0.7
2,652,498	-		ABIE51_RS12285	0.90	+0.8
2,652,592	+				-0.3
2,652,592	+				-0.8
2,652,593	-				-0.5
2,652,609	+				-0.1
2,652,609	+				+0.5
2,652,610	-				-0.1
2,652,663	+				+0.2
2,652,664	-				+0.5
2,652,683	-				+0.2
2,652,816	+				+0.6
2,652,816	+				+0.4
2,652,816	+				-0.9
2,652,816	+				+0.5
2,652,816	+				+0.6
2,652,817	-				+0.2
2,652,817	-				+0.2
2,652,958	+		ABIE51_RS12290	0.14	+0.5
2,652,959	-		ABIE51_RS12290	0.14	-0.1
2,652,959	-		ABIE51_RS12290	0.14	-0.7
2,652,959	-		ABIE51_RS12290	0.14	+0.2
2,652,959	-		ABIE51_RS12290	0.14	+0.6
2,652,959	-		ABIE51_RS12290	0.14	-1.7
2,652,959	-		ABIE51_RS12290	0.14	+0.0
2,652,959	-		ABIE51_RS12290	0.14	-0.6
2,652,959	-		ABIE51_RS12290	0.14	-0.1
2,653,090	+		ABIE51_RS12290	0.21	-0.5
2,653,090	+		ABIE51_RS12290	0.21	-0.6
2,653,091	-		ABIE51_RS12290	0.21	-1.2
2,653,210	+		ABIE51_RS12290	0.27	-1.3
2,653,210	+		ABIE51_RS12290	0.27	-0.3
2,653,210	+		ABIE51_RS12290	0.27	-0.3
2,653,211	-		ABIE51_RS12290	0.27	-1.0
2,653,211	-		ABIE51_RS12290	0.27	+0.4
2,653,252	+		ABIE51_RS12290	0.29	+0.8
2,653,381	+		ABIE51_RS12290	0.35	+0.0
2,653,381	+		ABIE51_RS12290	0.35	-0.3
2,653,382	-		ABIE51_RS12290	0.35	-0.2
2,653,606	+		ABIE51_RS12290	0.46	-0.4
2,653,614	+		ABIE51_RS12290	0.47	-0.7
2,653,705	+		ABIE51_RS12290	0.51	-0.0
2,653,705	+		ABIE51_RS12290	0.51	+0.6
2,653,706	-		ABIE51_RS12290	0.51	+0.8
2,653,887	+		ABIE51_RS12290	0.60	-0.8
2,653,887	+		ABIE51_RS12290	0.60	-0.2
2,653,887	+		ABIE51_RS12290	0.60	+0.2
2,653,888	-		ABIE51_RS12290	0.61	-0.2
2,653,888	-		ABIE51_RS12290	0.61	+0.1
2,653,888	-		ABIE51_RS12290	0.61	-0.4
2,653,888	-		ABIE51_RS12290	0.61	-0.9
2,653,987	+		ABIE51_RS12290	0.65	+0.5
2,653,987	+		ABIE51_RS12290	0.65	-0.1
2,653,988	-		ABIE51_RS12290	0.66	-0.8
2,653,988	-		ABIE51_RS12290	0.66	-0.3
2,653,988	-		ABIE51_RS12290	0.66	-2.0
2,653,988	-		ABIE51_RS12290	0.66	-0.1
2,654,089	+		ABIE51_RS12290	0.71	-0.5
2,654,089	+		ABIE51_RS12290	0.71	+1.2
2,654,090	-		ABIE51_RS12290	0.71	-0.0
2,654,090	-		ABIE51_RS12290	0.71	-0.1
2,654,090	-		ABIE51_RS12290	0.71	+0.2
2,654,218	+		ABIE51_RS12290	0.77	-0.4
2,654,218	+		ABIE51_RS12290	0.77	-0.0
2,654,219	-		ABIE51_RS12290	0.77	-0.7
2,654,219	-		ABIE51_RS12290	0.77	+0.4
2,654,219	-		ABIE51_RS12290	0.77	-0.1
2,654,219	-		ABIE51_RS12290	0.77	+0.0
2,654,275	+		ABIE51_RS12290	0.80	+0.0
2,654,276	-		ABIE51_RS12290	0.80	-0.3
2,654,407	+		ABIE51_RS12290	0.87	-0.6
2,654,407	+		ABIE51_RS12290	0.87	+0.5
2,654,407	+		ABIE51_RS12290	0.87	+1.2
2,654,407	+		ABIE51_RS12290	0.87	+1.6
2,654,407	+		ABIE51_RS12290	0.87	-0.2
2,654,407	+		ABIE51_RS12290	0.87	+1.2
2,654,407	+		ABIE51_RS12290	0.87	-1.1
2,654,407	+		ABIE51_RS12290	0.87	-0.1
2,654,408	-		ABIE51_RS12290	0.87	+0.6
2,654,408	-		ABIE51_RS12290	0.87	-0.4
2,654,408	-		ABIE51_RS12290	0.87	+0.1
2,654,408	-		ABIE51_RS12290	0.87	-1.0
2,654,408	-		ABIE51_RS12290	0.87	-2.0
2,654,408	-		ABIE51_RS12290	0.87	+0.7
2,654,408	-		ABIE51_RS12290	0.87	-1.1
2,654,408	-		ABIE51_RS12290	0.87	-0.8
2,654,408	-		ABIE51_RS12290	0.87	+0.3
2,654,408	-		ABIE51_RS12290	0.87	-0.1
2,654,581	-				+1.4
2,654,581	-				-1.4
2,654,581	-				-0.2
2,654,590	+				-0.7
2,654,590	+				-0.0
2,654,590	+				-0.0
2,654,591	-				-0.0
2,654,668	+				-0.0
2,654,668	+				-0.6
2,654,668	+				-0.9
2,654,669	-				+0.2
2,654,669	-				-1.7
2,654,669	-				+1.0
2,654,669	-				+0.4
2,654,669	-				-0.1
2,654,669	-				-1.5
2,654,669	-				+0.6
2,654,669	-				+0.4
2,654,723	-				+1.1
2,654,723	-				-0.8
2,654,723	-				-0.5
2,654,762	+				-0.2
2,654,763	-				+0.3
2,654,790	+				-0.4
2,654,790	+				-1.2
2,654,921	+		ABIE51_RS12295	0.35	-1.1
2,654,921	+		ABIE51_RS12295	0.35	+0.2
2,654,921	+		ABIE51_RS12295	0.35	+0.7
2,654,921	+		ABIE51_RS12295	0.35	-0.4
2,654,921	+		ABIE51_RS12295	0.35	+0.4
2,654,922	-		ABIE51_RS12295	0.35	+0.4
2,654,922	-		ABIE51_RS12295	0.35	+0.7
2,654,922	-		ABIE51_RS12295	0.35	+1.4
2,654,922	-		ABIE51_RS12295	0.35	-0.5
2,654,922	-		ABIE51_RS12295	0.35	-0.1
2,654,922	-		ABIE51_RS12295	0.35	+0.2
2,654,922	-		ABIE51_RS12295	0.35	+0.4
2,654,930	+		ABIE51_RS12295	0.38	-0.7
2,654,930	+		ABIE51_RS12295	0.38	+0.4
2,654,930	+		ABIE51_RS12295	0.38	-0.8
2,654,931	-		ABIE51_RS12295	0.39	+1.8
2,654,931	-		ABIE51_RS12295	0.39	-0.6
2,654,931	-		ABIE51_RS12295	0.39	+0.2
2,655,002	+		ABIE51_RS12295	0.66	+0.5
2,655,002	+		ABIE51_RS12295	0.66	-0.1
2,655,002	+		ABIE51_RS12295	0.66	-0.4
2,655,056	+		ABIE51_RS12295	0.87	-1.4
2,655,056	+		ABIE51_RS12295	0.87	-1.7
2,655,056	+		ABIE51_RS12295	0.87	-0.2
2,655,057	-		ABIE51_RS12295	0.88	+0.9
2,655,057	-		ABIE51_RS12295	0.88	+0.8
2,655,057	-		ABIE51_RS12295	0.88	+0.1
2,655,234	+		ABIE51_RS12300	0.20	+0.9
2,655,234	+		ABIE51_RS12300	0.20	+0.5
2,655,234	+		ABIE51_RS12300	0.20	-0.1
2,655,234	+		ABIE51_RS12300	0.20	+0.5
2,655,234	+		ABIE51_RS12300	0.20	+0.8
2,655,235	-		ABIE51_RS12300	0.20	-3.6
2,655,235	-		ABIE51_RS12300	0.20	+1.0
2,655,235	-		ABIE51_RS12300	0.20	-0.1
2,655,235	-		ABIE51_RS12300	0.20	+0.7
2,655,235	-		ABIE51_RS12300	0.20	-1.5
2,655,235	-		ABIE51_RS12300	0.20	+0.5
2,655,235	-		ABIE51_RS12300	0.20	+0.2
2,655,235	-		ABIE51_RS12300	0.20	+0.2
2,655,237	+		ABIE51_RS12300	0.20	+2.2
2,655,237	+		ABIE51_RS12300	0.20	-0.1
2,655,237	+		ABIE51_RS12300	0.20	+2.0
2,655,237	+		ABIE51_RS12300	0.20	+0.1
2,655,237	+		ABIE51_RS12300	0.20	+1.0
2,655,237	+		ABIE51_RS12300	0.20	+0.8
2,655,238	-		ABIE51_RS12300	0.20	-0.1
2,655,238	-		ABIE51_RS12300	0.20	-0.1
2,655,238	-		ABIE51_RS12300	0.20	-0.3
2,655,238	-		ABIE51_RS12300	0.20	+0.7
2,655,391	-		ABIE51_RS12300	0.45	-0.1
2,655,597	+		ABIE51_RS12300	0.78	-0.0
2,655,597	+		ABIE51_RS12300	0.78	-0.6
2,655,597	+		ABIE51_RS12300	0.78	+0.1
2,655,598	-		ABIE51_RS12300	0.78	-0.5
2,655,598	-		ABIE51_RS12300	0.78	+0.5
2,655,598	-		ABIE51_RS12300	0.78	+0.2
2,655,598	-		ABIE51_RS12300	0.78	+0.9
2,655,598	-		ABIE51_RS12300	0.78	+1.0
2,655,598	-		ABIE51_RS12300	0.78	-0.9
2,655,598	-		ABIE51_RS12300	0.78	+0.2
2,655,598	-		ABIE51_RS12300	0.78	-0.4