Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS08055

Experiment: Ying_all64 rep B; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE51_RS08050 and ABIE51_RS08055 overlap by 4 nucleotidesABIE51_RS08055 and ABIE51_RS08060 are separated by 87 nucleotides ABIE51_RS08050: ABIE51_RS08050 - NAD(P)H-hydrate dehydratase, at 1,711,984 to 1,713,486 _RS08050 ABIE51_RS08055: ABIE51_RS08055 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 1,713,483 to 1,713,956 _RS08055 ABIE51_RS08060: ABIE51_RS08060 - N-acetylmuramoyl-L-alanine amidase, at 1,714,044 to 1,715,723 _RS08060 Position (kb) 1713 1714Strain fitness (log2 ratio) -1 0 1at 1712.986 kb on + strand, within ABIE51_RS08050at 1712.986 kb on + strand, within ABIE51_RS08050at 1712.986 kb on + strand, within ABIE51_RS08050at 1713.185 kb on - strand, within ABIE51_RS08050at 1713.185 kb on - strand, within ABIE51_RS08050at 1714.036 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3
remove
1,712,986 + ABIE51_RS08050 0.67 -1.1
1,712,986 + ABIE51_RS08050 0.67 -0.2
1,712,986 + ABIE51_RS08050 0.67 +0.6
1,713,185 - ABIE51_RS08050 0.80 -1.1
1,713,185 - ABIE51_RS08050 0.80 +0.6
1,714,036 + -1.4

Or see this region's nucleotide sequence