Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS07440 and ABIE51_RS07445 overlap by 11 nucleotides ABIE51_RS07445 and ABIE51_RS07450 overlap by 4 nucleotides
ABIE51_RS07435: ABIE51_RS07435 - zinc-binding dehydrogenase, at 1,570,876 to 1,571,838
_RS07435
ABIE51_RS07440: ABIE51_RS07440 - Gfo/Idh/MocA family oxidoreductase, at 1,571,835 to 1,572,848
_RS07440
ABIE51_RS07445: ABIE51_RS07445 - glycosyltransferase family 4 protein, at 1,572,838 to 1,573,977
_RS07445
ABIE51_RS07450: ABIE51_RS07450 - glycosyltransferase, at 1,573,974 to 1,575,110
_RS07450
Position (kb) 1572
1573
1574 Strain fitness (log2 ratio) -1
0
1
2 at 1572.232 kb on - strand, within ABIE51_RS07440 at 1572.352 kb on - strand, within ABIE51_RS07440 at 1572.352 kb on - strand, within ABIE51_RS07440 at 1572.616 kb on - strand, within ABIE51_RS07440 at 1572.664 kb on - strand, within ABIE51_RS07440 at 1572.837 kb on + strand at 1572.838 kb on - strand at 1573.034 kb on - strand, within ABIE51_RS07445 at 1573.604 kb on - strand, within ABIE51_RS07445 at 1573.624 kb on + strand, within ABIE51_RS07445 at 1573.624 kb on + strand, within ABIE51_RS07445 at 1573.624 kb on + strand, within ABIE51_RS07445 at 1573.624 kb on + strand, within ABIE51_RS07445 at 1573.808 kb on + strand, within ABIE51_RS07445 at 1573.809 kb on - strand, within ABIE51_RS07445 at 1573.859 kb on - strand, within ABIE51_RS07445 at 1574.089 kb on - strand, within ABIE51_RS07450 at 1574.586 kb on + strand, within ABIE51_RS07450
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 1,572,232 - ABIE51_RS07440 0.39 -0.5 1,572,352 - ABIE51_RS07440 0.51 +1.8 1,572,352 - ABIE51_RS07440 0.51 -0.4 1,572,616 - ABIE51_RS07440 0.77 -0.1 1,572,664 - ABIE51_RS07440 0.82 -1.0 1,572,837 + +0.0 1,572,838 - +0.3 1,573,034 - ABIE51_RS07445 0.17 +0.4 1,573,604 - ABIE51_RS07445 0.67 +0.0 1,573,624 + ABIE51_RS07445 0.69 +0.1 1,573,624 + ABIE51_RS07445 0.69 +0.9 1,573,624 + ABIE51_RS07445 0.69 +0.1 1,573,624 + ABIE51_RS07445 0.69 -0.7 1,573,808 + ABIE51_RS07445 0.85 -0.2 1,573,809 - ABIE51_RS07445 0.85 -0.9 1,573,859 - ABIE51_RS07445 0.90 +0.0 1,574,089 - ABIE51_RS07450 0.10 +0.1 1,574,586 + ABIE51_RS07450 0.54 +0.4
Or see this region's nucleotide sequence