Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06005

Experiment: Ying_all64 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS06000 and ABIE51_RS06005 are separated by 101 nucleotidesABIE51_RS06005 and ABIE51_RS06010 are separated by 152 nucleotides ABIE51_RS06000: ABIE51_RS06000 - pyridoxal phosphate-dependent aminotransferase, at 1,275,925 to 1,277,130 _RS06000 ABIE51_RS06005: ABIE51_RS06005 - malate dehydrogenase, at 1,277,232 to 1,278,215 _RS06005 ABIE51_RS06010: ABIE51_RS06010 - propionate--CoA ligase, at 1,278,368 to 1,280,260 _RS06010 Position (kb) 1277 1278 1279Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1276.237 kb on + strand, within ABIE51_RS06000at 1276.237 kb on + strand, within ABIE51_RS06000at 1276.237 kb on + strand, within ABIE51_RS06000at 1276.237 kb on + strand, within ABIE51_RS06000at 1276.237 kb on + strand, within ABIE51_RS06000at 1276.237 kb on + strand, within ABIE51_RS06000at 1276.237 kb on + strand, within ABIE51_RS06000at 1276.237 kb on + strand, within ABIE51_RS06000at 1276.237 kb on + strand, within ABIE51_RS06000at 1276.237 kb on + strand, within ABIE51_RS06000at 1276.238 kb on - strand, within ABIE51_RS06000at 1276.238 kb on - strand, within ABIE51_RS06000at 1276.238 kb on - strand, within ABIE51_RS06000at 1276.238 kb on - strand, within ABIE51_RS06000at 1276.306 kb on + strand, within ABIE51_RS06000at 1276.306 kb on + strand, within ABIE51_RS06000at 1276.307 kb on - strand, within ABIE51_RS06000at 1276.307 kb on - strand, within ABIE51_RS06000at 1276.307 kb on - strand, within ABIE51_RS06000at 1276.372 kb on + strand, within ABIE51_RS06000at 1276.372 kb on + strand, within ABIE51_RS06000at 1276.372 kb on + strand, within ABIE51_RS06000at 1276.372 kb on + strand, within ABIE51_RS06000at 1276.372 kb on + strand, within ABIE51_RS06000at 1276.372 kb on + strand, within ABIE51_RS06000at 1276.373 kb on - strand, within ABIE51_RS06000at 1276.373 kb on - strand, within ABIE51_RS06000at 1276.373 kb on - strand, within ABIE51_RS06000at 1276.373 kb on - strand, within ABIE51_RS06000at 1276.373 kb on - strand, within ABIE51_RS06000at 1276.373 kb on - strand, within ABIE51_RS06000at 1276.465 kb on + strand, within ABIE51_RS06000at 1276.465 kb on + strand, within ABIE51_RS06000at 1276.465 kb on + strand, within ABIE51_RS06000at 1276.466 kb on - strand, within ABIE51_RS06000at 1276.466 kb on - strand, within ABIE51_RS06000at 1276.466 kb on - strand, within ABIE51_RS06000at 1276.466 kb on - strand, within ABIE51_RS06000at 1276.466 kb on - strand, within ABIE51_RS06000at 1276.510 kb on + strand, within ABIE51_RS06000at 1276.543 kb on + strand, within ABIE51_RS06000at 1276.543 kb on + strand, within ABIE51_RS06000at 1276.543 kb on + strand, within ABIE51_RS06000at 1276.543 kb on + strand, within ABIE51_RS06000at 1276.543 kb on + strand, within ABIE51_RS06000at 1276.544 kb on - strand, within ABIE51_RS06000at 1276.544 kb on - strand, within ABIE51_RS06000at 1276.544 kb on - strand, within ABIE51_RS06000at 1276.573 kb on + strand, within ABIE51_RS06000at 1276.645 kb on + strand, within ABIE51_RS06000at 1276.645 kb on + strand, within ABIE51_RS06000at 1276.645 kb on + strand, within ABIE51_RS06000at 1276.645 kb on + strand, within ABIE51_RS06000at 1276.645 kb on + strand, within ABIE51_RS06000at 1276.646 kb on - strand, within ABIE51_RS06000at 1276.646 kb on - strand, within ABIE51_RS06000at 1276.646 kb on - strand, within ABIE51_RS06000at 1276.646 kb on - strand, within ABIE51_RS06000at 1276.646 kb on - strand, within ABIE51_RS06000at 1277.059 kb on + strandat 1277.059 kb on + strandat 1277.059 kb on + strandat 1277.059 kb on + strandat 1277.060 kb on - strandat 1277.060 kb on - strandat 1277.060 kb on - strandat 1277.191 kb on + strandat 1277.191 kb on + strandat 1277.191 kb on + strandat 1277.192 kb on - strandat 1277.192 kb on - strandat 1277.192 kb on - strandat 1278.310 kb on - strandat 1278.374 kb on + strandat 1278.375 kb on - strandat 1278.375 kb on - strandat 1278.375 kb on - strandat 1278.387 kb on - strandat 1278.477 kb on - strandat 1278.477 kb on - strandat 1278.477 kb on - strandat 1278.623 kb on + strand, within ABIE51_RS06010at 1278.624 kb on - strand, within ABIE51_RS06010at 1278.707 kb on + strand, within ABIE51_RS06010at 1278.707 kb on + strand, within ABIE51_RS06010at 1278.707 kb on + strand, within ABIE51_RS06010at 1278.707 kb on + strand, within ABIE51_RS06010at 1278.708 kb on - strand, within ABIE51_RS06010at 1278.708 kb on - strand, within ABIE51_RS06010at 1278.708 kb on - strand, within ABIE51_RS06010at 1278.708 kb on - strand, within ABIE51_RS06010at 1278.708 kb on - strand, within ABIE51_RS06010at 1278.708 kb on - strand, within ABIE51_RS06010at 1278.888 kb on - strand, within ABIE51_RS06010at 1278.888 kb on - strand, within ABIE51_RS06010at 1279.004 kb on + strand, within ABIE51_RS06010at 1279.004 kb on + strand, within ABIE51_RS06010at 1279.004 kb on + strand, within ABIE51_RS06010at 1279.005 kb on - strand, within ABIE51_RS06010at 1279.005 kb on - strand, within ABIE51_RS06010at 1279.025 kb on + strand, within ABIE51_RS06010at 1279.026 kb on - strand, within ABIE51_RS06010at 1279.026 kb on - strand, within ABIE51_RS06010at 1279.076 kb on + strand, within ABIE51_RS06010at 1279.076 kb on + strand, within ABIE51_RS06010at 1279.076 kb on + strand, within ABIE51_RS06010at 1279.077 kb on - strand, within ABIE51_RS06010at 1279.077 kb on - strand, within ABIE51_RS06010at 1279.077 kb on - strand, within ABIE51_RS06010at 1279.085 kb on + strand, within ABIE51_RS06010at 1279.085 kb on + strand, within ABIE51_RS06010at 1279.085 kb on + strand, within ABIE51_RS06010at 1279.085 kb on + strand, within ABIE51_RS06010at 1279.085 kb on + strand, within ABIE51_RS06010at 1279.085 kb on + strand, within ABIE51_RS06010at 1279.086 kb on - strand, within ABIE51_RS06010at 1279.086 kb on - strand, within ABIE51_RS06010at 1279.086 kb on - strand, within ABIE51_RS06010at 1279.086 kb on - strand, within ABIE51_RS06010at 1279.086 kb on - strand, within ABIE51_RS06010at 1279.086 kb on - strand, within ABIE51_RS06010at 1279.086 kb on - strand, within ABIE51_RS06010at 1279.086 kb on - strand, within ABIE51_RS06010at 1279.140 kb on - strand, within ABIE51_RS06010at 1279.175 kb on + strand, within ABIE51_RS06010at 1279.175 kb on + strand, within ABIE51_RS06010at 1279.175 kb on + strand, within ABIE51_RS06010at 1279.175 kb on + strand, within ABIE51_RS06010at 1279.176 kb on - strand, within ABIE51_RS06010

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3
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1,276,237 + ABIE51_RS06000 0.26 -2.0
1,276,237 + ABIE51_RS06000 0.26 +0.3
1,276,237 + ABIE51_RS06000 0.26 -0.7
1,276,237 + ABIE51_RS06000 0.26 -1.9
1,276,237 + ABIE51_RS06000 0.26 -2.4
1,276,237 + ABIE51_RS06000 0.26 -0.7
1,276,237 + ABIE51_RS06000 0.26 +1.3
1,276,237 + ABIE51_RS06000 0.26 -2.0
1,276,237 + ABIE51_RS06000 0.26 -1.3
1,276,237 + ABIE51_RS06000 0.26 -1.7
1,276,238 - ABIE51_RS06000 0.26 +1.3
1,276,238 - ABIE51_RS06000 0.26 -0.3
1,276,238 - ABIE51_RS06000 0.26 -1.3
1,276,238 - ABIE51_RS06000 0.26 +0.3
1,276,306 + ABIE51_RS06000 0.32 -2.3
1,276,306 + ABIE51_RS06000 0.32 +0.3
1,276,307 - ABIE51_RS06000 0.32 -0.3
1,276,307 - ABIE51_RS06000 0.32 -2.0
1,276,307 - ABIE51_RS06000 0.32 +1.3
1,276,372 + ABIE51_RS06000 0.37 -0.7
1,276,372 + ABIE51_RS06000 0.37 -0.7
1,276,372 + ABIE51_RS06000 0.37 -1.7
1,276,372 + ABIE51_RS06000 0.37 -0.7
1,276,372 + ABIE51_RS06000 0.37 -1.7
1,276,372 + ABIE51_RS06000 0.37 -0.3
1,276,373 - ABIE51_RS06000 0.37 +0.3
1,276,373 - ABIE51_RS06000 0.37 -0.7
1,276,373 - ABIE51_RS06000 0.37 -0.3
1,276,373 - ABIE51_RS06000 0.37 -1.7
1,276,373 - ABIE51_RS06000 0.37 -1.5
1,276,373 - ABIE51_RS06000 0.37 -2.4
1,276,465 + ABIE51_RS06000 0.45 -0.3
1,276,465 + ABIE51_RS06000 0.45 -2.9
1,276,465 + ABIE51_RS06000 0.45 -1.9
1,276,466 - ABIE51_RS06000 0.45 -2.3
1,276,466 - ABIE51_RS06000 0.45 +1.3
1,276,466 - ABIE51_RS06000 0.45 -0.3
1,276,466 - ABIE51_RS06000 0.45 -1.3
1,276,466 - ABIE51_RS06000 0.45 -1.9
1,276,510 + ABIE51_RS06000 0.49 -0.3
1,276,543 + ABIE51_RS06000 0.51 +0.3
1,276,543 + ABIE51_RS06000 0.51 -2.2
1,276,543 + ABIE51_RS06000 0.51 -2.2
1,276,543 + ABIE51_RS06000 0.51 -1.5
1,276,543 + ABIE51_RS06000 0.51 -0.7
1,276,544 - ABIE51_RS06000 0.51 -0.3
1,276,544 - ABIE51_RS06000 0.51 -2.8
1,276,544 - ABIE51_RS06000 0.51 +1.3
1,276,573 + ABIE51_RS06000 0.54 +0.3
1,276,645 + ABIE51_RS06000 0.60 -0.3
1,276,645 + ABIE51_RS06000 0.60 -2.3
1,276,645 + ABIE51_RS06000 0.60 -2.4
1,276,645 + ABIE51_RS06000 0.60 -1.0
1,276,645 + ABIE51_RS06000 0.60 -3.1
1,276,646 - ABIE51_RS06000 0.60 -1.5
1,276,646 - ABIE51_RS06000 0.60 -2.3
1,276,646 - ABIE51_RS06000 0.60 +0.3
1,276,646 - ABIE51_RS06000 0.60 -0.7
1,276,646 - ABIE51_RS06000 0.60 -1.0
1,277,059 + -1.7
1,277,059 + -1.3
1,277,059 + -2.3
1,277,059 + -1.5
1,277,060 - -1.5
1,277,060 - -0.3
1,277,060 - -1.5
1,277,191 + -1.0
1,277,191 + -1.0
1,277,191 + -2.5
1,277,192 - -0.2
1,277,192 - -0.1
1,277,192 - -2.0
1,278,310 - +0.2
1,278,374 + -0.0
1,278,375 - -0.1
1,278,375 - +2.0
1,278,375 - +0.0
1,278,387 - -2.2
1,278,477 - -0.0
1,278,477 - -0.3
1,278,477 - +0.4
1,278,623 + ABIE51_RS06010 0.13 -0.1
1,278,624 - ABIE51_RS06010 0.14 -0.1
1,278,707 + ABIE51_RS06010 0.18 +0.5
1,278,707 + ABIE51_RS06010 0.18 -0.7
1,278,707 + ABIE51_RS06010 0.18 +0.6
1,278,707 + ABIE51_RS06010 0.18 +0.8
1,278,708 - ABIE51_RS06010 0.18 -0.8
1,278,708 - ABIE51_RS06010 0.18 -0.4
1,278,708 - ABIE51_RS06010 0.18 -0.1
1,278,708 - ABIE51_RS06010 0.18 +0.1
1,278,708 - ABIE51_RS06010 0.18 +0.0
1,278,708 - ABIE51_RS06010 0.18 -0.6
1,278,888 - ABIE51_RS06010 0.27 +0.7
1,278,888 - ABIE51_RS06010 0.27 +0.2
1,279,004 + ABIE51_RS06010 0.34 -0.6
1,279,004 + ABIE51_RS06010 0.34 +3.3
1,279,004 + ABIE51_RS06010 0.34 -0.9
1,279,005 - ABIE51_RS06010 0.34 +0.0
1,279,005 - ABIE51_RS06010 0.34 +0.7
1,279,025 + ABIE51_RS06010 0.35 -0.0
1,279,026 - ABIE51_RS06010 0.35 -0.2
1,279,026 - ABIE51_RS06010 0.35 -0.3
1,279,076 + ABIE51_RS06010 0.37 -1.3
1,279,076 + ABIE51_RS06010 0.37 -1.0
1,279,076 + ABIE51_RS06010 0.37 +0.6
1,279,077 - ABIE51_RS06010 0.37 +0.4
1,279,077 - ABIE51_RS06010 0.37 +0.6
1,279,077 - ABIE51_RS06010 0.37 -0.5
1,279,085 + ABIE51_RS06010 0.38 +0.3
1,279,085 + ABIE51_RS06010 0.38 -0.7
1,279,085 + ABIE51_RS06010 0.38 +0.3
1,279,085 + ABIE51_RS06010 0.38 +0.1
1,279,085 + ABIE51_RS06010 0.38 -2.2
1,279,085 + ABIE51_RS06010 0.38 +0.3
1,279,086 - ABIE51_RS06010 0.38 +0.6
1,279,086 - ABIE51_RS06010 0.38 -0.1
1,279,086 - ABIE51_RS06010 0.38 +0.4
1,279,086 - ABIE51_RS06010 0.38 -0.8
1,279,086 - ABIE51_RS06010 0.38 -0.5
1,279,086 - ABIE51_RS06010 0.38 +0.0
1,279,086 - ABIE51_RS06010 0.38 +0.5
1,279,086 - ABIE51_RS06010 0.38 -0.3
1,279,140 - ABIE51_RS06010 0.41 -0.4
1,279,175 + ABIE51_RS06010 0.43 +1.1
1,279,175 + ABIE51_RS06010 0.43 +0.3
1,279,175 + ABIE51_RS06010 0.43 -0.5
1,279,175 + ABIE51_RS06010 0.43 -1.1
1,279,176 - ABIE51_RS06010 0.43 +1.3

Or see this region's nucleotide sequence