Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03540 and ABIE51_RS03545 are separated by 81 nucleotides ABIE51_RS03545 and ABIE51_RS03550 are separated by 131 nucleotides ABIE51_RS03550 and ABIE51_RS03555 are separated by 111 nucleotides
ABIE51_RS03540: ABIE51_RS03540 - hypothetical protein, at 780,981 to 781,280
_RS03540
ABIE51_RS03545: ABIE51_RS03545 - hypothetical protein, at 781,362 to 781,808
_RS03545
ABIE51_RS03550: ABIE51_RS03550 - HIT family protein, at 781,940 to 782,410
_RS03550
ABIE51_RS03555: ABIE51_RS03555 - Xaa-Pro peptidase family protein, at 782,522 to 783,775
_RS03555
Position (kb) 781
782
783 Strain fitness (log2 ratio) -2
-1
0
1
2 at 780.980 kb on + strand at 780.980 kb on + strand at 780.980 kb on + strand at 780.980 kb on + strand at 780.980 kb on + strand at 780.981 kb on - strand at 780.981 kb on - strand at 780.987 kb on + strand at 780.988 kb on - strand at 780.998 kb on + strand at 780.999 kb on - strand at 780.999 kb on - strand at 781.020 kb on + strand, within ABIE51_RS03540 at 781.156 kb on - strand, within ABIE51_RS03540 at 781.156 kb on - strand, within ABIE51_RS03540 at 781.243 kb on + strand, within ABIE51_RS03540 at 781.243 kb on + strand, within ABIE51_RS03540 at 781.243 kb on + strand, within ABIE51_RS03540 at 781.244 kb on - strand, within ABIE51_RS03540 at 781.244 kb on - strand, within ABIE51_RS03540 at 781.247 kb on + strand, within ABIE51_RS03540 at 781.247 kb on + strand, within ABIE51_RS03540 at 781.247 kb on + strand, within ABIE51_RS03540 at 781.247 kb on + strand, within ABIE51_RS03540 at 781.248 kb on - strand, within ABIE51_RS03540 at 781.248 kb on - strand, within ABIE51_RS03540 at 781.248 kb on - strand, within ABIE51_RS03540 at 781.254 kb on + strand at 781.254 kb on + strand at 781.255 kb on - strand at 781.255 kb on - strand at 781.256 kb on + strand at 781.256 kb on + strand at 781.256 kb on + strand at 781.256 kb on + strand at 781.256 kb on + strand at 781.257 kb on - strand at 781.257 kb on - strand at 781.257 kb on - strand at 781.257 kb on - strand at 781.257 kb on - strand at 781.257 kb on - strand at 781.264 kb on - strand at 781.264 kb on - strand at 781.266 kb on - strand at 781.350 kb on + strand at 781.351 kb on - strand at 781.361 kb on + strand at 781.361 kb on + strand at 781.362 kb on - strand at 781.419 kb on + strand, within ABIE51_RS03545 at 781.419 kb on + strand, within ABIE51_RS03545 at 781.419 kb on + strand, within ABIE51_RS03545 at 781.425 kb on + strand, within ABIE51_RS03545 at 781.425 kb on + strand, within ABIE51_RS03545 at 781.425 kb on + strand, within ABIE51_RS03545 at 781.473 kb on + strand, within ABIE51_RS03545 at 781.596 kb on + strand, within ABIE51_RS03545 at 781.622 kb on - strand, within ABIE51_RS03545 at 781.632 kb on + strand, within ABIE51_RS03545 at 781.686 kb on + strand, within ABIE51_RS03545 at 781.714 kb on + strand, within ABIE51_RS03545 at 781.714 kb on + strand, within ABIE51_RS03545 at 781.715 kb on - strand, within ABIE51_RS03545 at 781.733 kb on + strand, within ABIE51_RS03545 at 781.734 kb on - strand, within ABIE51_RS03545 at 781.734 kb on - strand, within ABIE51_RS03545 at 781.734 kb on - strand, within ABIE51_RS03545 at 781.756 kb on - strand, within ABIE51_RS03545 at 781.806 kb on + strand at 781.807 kb on - strand at 781.828 kb on + strand at 781.828 kb on + strand at 781.828 kb on + strand at 781.828 kb on + strand at 781.828 kb on + strand at 781.828 kb on + strand at 781.828 kb on + strand at 781.829 kb on - strand at 781.829 kb on - strand at 781.829 kb on - strand at 781.829 kb on - strand at 781.908 kb on + strand at 781.908 kb on + strand at 781.914 kb on + strand at 781.914 kb on + strand at 782.141 kb on + strand, within ABIE51_RS03550 at 782.141 kb on + strand, within ABIE51_RS03550 at 782.142 kb on - strand, within ABIE51_RS03550 at 782.209 kb on - strand, within ABIE51_RS03550 at 782.352 kb on + strand, within ABIE51_RS03550 at 782.353 kb on - strand, within ABIE51_RS03550 at 782.353 kb on - strand, within ABIE51_RS03550 at 782.451 kb on - strand at 782.485 kb on + strand at 782.486 kb on - strand at 782.753 kb on + strand, within ABIE51_RS03555 at 782.754 kb on - strand, within ABIE51_RS03555 at 783.035 kb on + strand, within ABIE51_RS03555 at 783.036 kb on - strand, within ABIE51_RS03555 at 783.146 kb on + strand, within ABIE51_RS03555 at 783.146 kb on + strand, within ABIE51_RS03555 at 783.273 kb on - strand, within ABIE51_RS03555
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 780,980 + +0.6 780,980 + -0.4 780,980 + +0.3 780,980 + -0.5 780,980 + +0.3 780,981 - +0.3 780,981 - -1.0 780,987 + +0.6 780,988 - -0.0 780,998 + -0.8 780,999 - -0.1 780,999 - +0.1 781,020 + ABIE51_RS03540 0.13 +0.6 781,156 - ABIE51_RS03540 0.58 +1.3 781,156 - ABIE51_RS03540 0.58 -0.1 781,243 + ABIE51_RS03540 0.87 +0.2 781,243 + ABIE51_RS03540 0.87 -0.0 781,243 + ABIE51_RS03540 0.87 +0.1 781,244 - ABIE51_RS03540 0.88 -0.1 781,244 - ABIE51_RS03540 0.88 +0.2 781,247 + ABIE51_RS03540 0.89 -0.1 781,247 + ABIE51_RS03540 0.89 +0.3 781,247 + ABIE51_RS03540 0.89 +0.3 781,247 + ABIE51_RS03540 0.89 +0.4 781,248 - ABIE51_RS03540 0.89 +1.1 781,248 - ABIE51_RS03540 0.89 -1.3 781,248 - ABIE51_RS03540 0.89 -1.3 781,254 + -1.0 781,254 + +0.3 781,255 - +0.1 781,255 - -2.5 781,256 + -0.3 781,256 + -0.2 781,256 + +1.3 781,256 + +0.2 781,256 + +0.3 781,257 - -0.6 781,257 - +0.1 781,257 - -0.3 781,257 - +0.3 781,257 - -0.3 781,257 - -0.4 781,264 - +0.2 781,264 - -0.3 781,266 - +0.8 781,350 + +1.9 781,351 - -1.7 781,361 + +2.3 781,361 + +2.3 781,362 - +0.2 781,419 + ABIE51_RS03545 0.13 +0.8 781,419 + ABIE51_RS03545 0.13 -0.6 781,419 + ABIE51_RS03545 0.13 -0.8 781,425 + ABIE51_RS03545 0.14 -0.1 781,425 + ABIE51_RS03545 0.14 -0.3 781,425 + ABIE51_RS03545 0.14 +0.6 781,473 + ABIE51_RS03545 0.25 +0.4 781,596 + ABIE51_RS03545 0.52 -0.2 781,622 - ABIE51_RS03545 0.58 +0.5 781,632 + ABIE51_RS03545 0.60 -0.7 781,686 + ABIE51_RS03545 0.72 -0.6 781,714 + ABIE51_RS03545 0.79 +0.5 781,714 + ABIE51_RS03545 0.79 -0.1 781,715 - ABIE51_RS03545 0.79 +0.2 781,733 + ABIE51_RS03545 0.83 +0.3 781,734 - ABIE51_RS03545 0.83 -0.5 781,734 - ABIE51_RS03545 0.83 -2.2 781,734 - ABIE51_RS03545 0.83 -0.5 781,756 - ABIE51_RS03545 0.88 -0.1 781,806 + -0.6 781,807 - -0.8 781,828 + -0.7 781,828 + -0.2 781,828 + +0.2 781,828 + +0.6 781,828 + +0.5 781,828 + -0.0 781,828 + +0.5 781,829 - +0.4 781,829 - +0.6 781,829 - -0.3 781,829 - -0.3 781,908 + +0.0 781,908 + +0.0 781,914 + -0.7 781,914 + +0.2 782,141 + ABIE51_RS03550 0.43 -0.3 782,141 + ABIE51_RS03550 0.43 +0.1 782,142 - ABIE51_RS03550 0.43 +1.1 782,209 - ABIE51_RS03550 0.57 +0.8 782,352 + ABIE51_RS03550 0.87 -0.1 782,353 - ABIE51_RS03550 0.88 +0.4 782,353 - ABIE51_RS03550 0.88 -1.7 782,451 - +0.3 782,485 + -1.6 782,486 - +0.3 782,753 + ABIE51_RS03555 0.18 -1.0 782,754 - ABIE51_RS03555 0.19 +0.1 783,035 + ABIE51_RS03555 0.41 +0.9 783,036 - ABIE51_RS03555 0.41 -1.3 783,146 + ABIE51_RS03555 0.50 +0.1 783,146 + ABIE51_RS03555 0.50 -0.6 783,273 - ABIE51_RS03555 0.60 -0.8
Or see this region's nucleotide sequence