Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02105 and ABIE51_RS02110 are separated by 145 nucleotides ABIE51_RS02110 and ABIE51_RS02115 overlap by 17 nucleotides
ABIE51_RS02105: ABIE51_RS02105 - RNA polymerase sigma factor RpoH, at 471,359 to 472,234
_RS02105
ABIE51_RS02110: ABIE51_RS02110 - DUF1203 domain-containing protein, at 472,380 to 472,844
_RS02110
ABIE51_RS02115: ABIE51_RS02115 - NAD(P)/FAD-dependent oxidoreductase, at 472,828 to 474,111
_RS02115
Position (kb) 472
473 Strain fitness (log2 ratio) -2
-1
0
1 at 472.232 kb on + strand at 472.233 kb on - strand at 472.233 kb on - strand at 472.327 kb on - strand at 472.555 kb on - strand, within ABIE51_RS02110 at 472.581 kb on + strand, within ABIE51_RS02110 at 472.581 kb on + strand, within ABIE51_RS02110 at 472.690 kb on - strand, within ABIE51_RS02110 at 472.806 kb on + strand at 472.807 kb on - strand at 472.815 kb on + strand at 472.895 kb on + strand at 472.896 kb on - strand at 472.896 kb on - strand at 472.904 kb on + strand at 472.904 kb on + strand at 472.904 kb on + strand at 472.904 kb on + strand at 472.905 kb on - strand at 472.905 kb on - strand at 472.905 kb on - strand at 473.218 kb on + strand, within ABIE51_RS02115 at 473.219 kb on - strand, within ABIE51_RS02115 at 473.219 kb on - strand, within ABIE51_RS02115 at 473.372 kb on + strand, within ABIE51_RS02115 at 473.372 kb on + strand, within ABIE51_RS02115 at 473.768 kb on + strand, within ABIE51_RS02115 at 473.768 kb on + strand, within ABIE51_RS02115 at 473.769 kb on - strand, within ABIE51_RS02115 at 473.769 kb on - strand, within ABIE51_RS02115 at 473.801 kb on + strand, within ABIE51_RS02115 at 473.801 kb on + strand, within ABIE51_RS02115 at 473.801 kb on + strand, within ABIE51_RS02115 at 473.801 kb on + strand, within ABIE51_RS02115 at 473.801 kb on + strand, within ABIE51_RS02115 at 473.802 kb on - strand, within ABIE51_RS02115 at 473.802 kb on - strand, within ABIE51_RS02115 at 473.807 kb on + strand, within ABIE51_RS02115 at 473.807 kb on + strand, within ABIE51_RS02115 at 473.807 kb on + strand, within ABIE51_RS02115 at 473.807 kb on + strand, within ABIE51_RS02115 at 473.808 kb on - strand, within ABIE51_RS02115 at 473.808 kb on - strand, within ABIE51_RS02115
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 472,232 + -0.5 472,233 - +0.3 472,233 - +0.1 472,327 - -0.7 472,555 - ABIE51_RS02110 0.38 +0.1 472,581 + ABIE51_RS02110 0.43 -0.2 472,581 + ABIE51_RS02110 0.43 -0.0 472,690 - ABIE51_RS02110 0.67 -0.0 472,806 + -0.3 472,807 - +0.0 472,815 + +0.9 472,895 + +0.9 472,896 - -0.5 472,896 - -0.4 472,904 + +0.1 472,904 + -0.0 472,904 + +1.1 472,904 + -0.4 472,905 - +0.5 472,905 - -0.3 472,905 - +0.8 473,218 + ABIE51_RS02115 0.30 -0.5 473,219 - ABIE51_RS02115 0.30 +1.1 473,219 - ABIE51_RS02115 0.30 +0.9 473,372 + ABIE51_RS02115 0.42 +0.6 473,372 + ABIE51_RS02115 0.42 -1.1 473,768 + ABIE51_RS02115 0.73 -0.4 473,768 + ABIE51_RS02115 0.73 -0.7 473,769 - ABIE51_RS02115 0.73 -0.1 473,769 - ABIE51_RS02115 0.73 +0.3 473,801 + ABIE51_RS02115 0.76 +1.6 473,801 + ABIE51_RS02115 0.76 -0.6 473,801 + ABIE51_RS02115 0.76 +0.6 473,801 + ABIE51_RS02115 0.76 -1.1 473,801 + ABIE51_RS02115 0.76 +0.3 473,802 - ABIE51_RS02115 0.76 -0.0 473,802 - ABIE51_RS02115 0.76 +0.4 473,807 + ABIE51_RS02115 0.76 +0.1 473,807 + ABIE51_RS02115 0.76 -1.0 473,807 + ABIE51_RS02115 0.76 -1.2 473,807 + ABIE51_RS02115 0.76 -2.3 473,808 - ABIE51_RS02115 0.76 -0.3 473,808 - ABIE51_RS02115 0.76 -0.9
Or see this region's nucleotide sequence