Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS00115

Experiment: Ying_all64 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS00105 and ABIE51_RS00110 are separated by 393 nucleotidesABIE51_RS00110 and ABIE51_RS00115 are separated by 9 nucleotidesABIE51_RS00115 and ABIE51_RS00120 are separated by 19 nucleotidesABIE51_RS00120 and ABIE51_RS00125 are separated by 52 nucleotides ABIE51_RS00105: ABIE51_RS00105 - SPOR domain-containing protein, at 21,385 to 22,245 _RS00105 ABIE51_RS00110: ABIE51_RS00110 - hypothetical protein, at 22,639 to 23,034 _RS00110 ABIE51_RS00115: ABIE51_RS00115 - NAD(P)-dependent oxidoreductase, at 23,044 to 23,919 _RS00115 ABIE51_RS00120: ABIE51_RS00120 - YciI family protein, at 23,939 to 24,145 _RS00120 ABIE51_RS00125: ABIE51_RS00125 - arginine decarboxylase, at 24,198 to 26,105 _RS00125 Position (kb) 23 24Strain fitness (log2 ratio) -1 0 1 2at 22.243 kb on + strandat 22.243 kb on + strandat 22.243 kb on + strandat 22.243 kb on + strandat 22.243 kb on + strandat 22.243 kb on + strandat 22.244 kb on - strandat 22.244 kb on - strandat 22.244 kb on - strandat 22.244 kb on - strandat 22.244 kb on - strandat 22.244 kb on - strandat 22.244 kb on - strandat 22.244 kb on - strandat 22.319 kb on + strandat 22.319 kb on + strandat 22.319 kb on + strandat 22.319 kb on + strandat 22.320 kb on - strandat 22.320 kb on - strandat 22.371 kb on + strandat 22.600 kb on - strandat 22.708 kb on + strand, within ABIE51_RS00110at 22.708 kb on + strand, within ABIE51_RS00110at 22.708 kb on + strand, within ABIE51_RS00110at 22.708 kb on + strand, within ABIE51_RS00110at 22.708 kb on + strand, within ABIE51_RS00110at 22.708 kb on + strand, within ABIE51_RS00110at 22.709 kb on - strand, within ABIE51_RS00110at 22.709 kb on - strand, within ABIE51_RS00110at 22.709 kb on - strand, within ABIE51_RS00110at 22.709 kb on - strand, within ABIE51_RS00110at 22.709 kb on - strand, within ABIE51_RS00110at 22.784 kb on + strand, within ABIE51_RS00110at 22.784 kb on + strand, within ABIE51_RS00110at 22.784 kb on + strand, within ABIE51_RS00110at 22.785 kb on - strand, within ABIE51_RS00110at 22.785 kb on - strand, within ABIE51_RS00110at 22.785 kb on - strand, within ABIE51_RS00110at 22.785 kb on - strand, within ABIE51_RS00110at 22.785 kb on - strand, within ABIE51_RS00110at 22.785 kb on - strand, within ABIE51_RS00110at 23.080 kb on - strandat 23.080 kb on - strandat 23.117 kb on + strandat 23.117 kb on + strandat 23.117 kb on + strandat 23.118 kb on - strandat 23.118 kb on - strandat 23.118 kb on - strandat 23.610 kb on + strand, within ABIE51_RS00115at 23.685 kb on - strand, within ABIE51_RS00115at 23.846 kb on + strandat 23.846 kb on + strandat 23.846 kb on + strandat 23.846 kb on + strandat 23.846 kb on + strandat 23.847 kb on - strandat 23.847 kb on - strandat 24.051 kb on + strand, within ABIE51_RS00120at 24.051 kb on + strand, within ABIE51_RS00120at 24.051 kb on + strand, within ABIE51_RS00120at 24.051 kb on + strand, within ABIE51_RS00120at 24.051 kb on + strand, within ABIE51_RS00120at 24.051 kb on + strand, within ABIE51_RS00120at 24.051 kb on + strand, within ABIE51_RS00120at 24.051 kb on + strand, within ABIE51_RS00120at 24.051 kb on + strand, within ABIE51_RS00120at 24.051 kb on + strand, within ABIE51_RS00120at 24.051 kb on + strand, within ABIE51_RS00120at 24.052 kb on - strand, within ABIE51_RS00120at 24.052 kb on - strand, within ABIE51_RS00120at 24.052 kb on - strand, within ABIE51_RS00120at 24.179 kb on + strandat 24.179 kb on + strandat 24.179 kb on + strandat 24.180 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3
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22,243 + +0.5
22,243 + -0.3
22,243 + -0.2
22,243 + +0.1
22,243 + -0.1
22,243 + +0.5
22,244 - +0.4
22,244 - +2.0
22,244 - -0.3
22,244 - +0.7
22,244 - +1.8
22,244 - -1.3
22,244 - +0.5
22,244 - +0.4
22,319 + +0.6
22,319 + -0.2
22,319 + -0.3
22,319 + +0.5
22,320 - -0.8
22,320 - +0.1
22,371 + -0.3
22,600 - +1.1
22,708 + ABIE51_RS00110 0.17 -0.4
22,708 + ABIE51_RS00110 0.17 +1.4
22,708 + ABIE51_RS00110 0.17 +0.5
22,708 + ABIE51_RS00110 0.17 +0.4
22,708 + ABIE51_RS00110 0.17 +0.4
22,708 + ABIE51_RS00110 0.17 -0.7
22,709 - ABIE51_RS00110 0.18 +1.0
22,709 - ABIE51_RS00110 0.18 -0.1
22,709 - ABIE51_RS00110 0.18 +0.9
22,709 - ABIE51_RS00110 0.18 +1.0
22,709 - ABIE51_RS00110 0.18 -0.4
22,784 + ABIE51_RS00110 0.37 +0.2
22,784 + ABIE51_RS00110 0.37 +1.4
22,784 + ABIE51_RS00110 0.37 +0.6
22,785 - ABIE51_RS00110 0.37 +0.3
22,785 - ABIE51_RS00110 0.37 -0.2
22,785 - ABIE51_RS00110 0.37 +0.6
22,785 - ABIE51_RS00110 0.37 +0.1
22,785 - ABIE51_RS00110 0.37 +0.2
22,785 - ABIE51_RS00110 0.37 +0.5
23,080 - +0.6
23,080 - +0.1
23,117 + +0.4
23,117 + -0.2
23,117 + -0.8
23,118 - -0.2
23,118 - -0.4
23,118 - +0.2
23,610 + ABIE51_RS00115 0.65 +0.8
23,685 - ABIE51_RS00115 0.73 +1.4
23,846 + +0.7
23,846 + -0.9
23,846 + -0.2
23,846 + +1.4
23,846 + +0.5
23,847 - -0.2
23,847 - +0.3
24,051 + ABIE51_RS00120 0.54 -0.8
24,051 + ABIE51_RS00120 0.54 -0.2
24,051 + ABIE51_RS00120 0.54 +0.4
24,051 + ABIE51_RS00120 0.54 -1.3
24,051 + ABIE51_RS00120 0.54 +0.5
24,051 + ABIE51_RS00120 0.54 -0.9
24,051 + ABIE51_RS00120 0.54 +0.7
24,051 + ABIE51_RS00120 0.54 +0.1
24,051 + ABIE51_RS00120 0.54 +0.5
24,051 + ABIE51_RS00120 0.54 +1.4
24,051 + ABIE51_RS00120 0.54 -1.6
24,052 - ABIE51_RS00120 0.55 -0.2
24,052 - ABIE51_RS00120 0.55 +0.4
24,052 - ABIE51_RS00120 0.55 +1.4
24,179 + -1.2
24,179 + +1.0
24,179 + -0.5
24,180 - -0.6

Or see this region's nucleotide sequence