Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS13900

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
3,015,610	+		ABIE51_RS13895	0.58	+0.3
3,015,610	+		ABIE51_RS13895	0.58	+1.6
3,015,610	+		ABIE51_RS13895	0.58	-0.4
3,015,610	+		ABIE51_RS13895	0.58	+0.4
3,015,610	+		ABIE51_RS13895	0.58	-0.1
3,015,610	+		ABIE51_RS13895	0.58	+0.5
3,015,611	-		ABIE51_RS13895	0.58	+0.4
3,015,611	-		ABIE51_RS13895	0.58	+0.1
3,015,611	-		ABIE51_RS13895	0.58	-0.3
3,015,730	+		ABIE51_RS13895	0.64	-0.0
3,015,730	+		ABIE51_RS13895	0.64	+0.5
3,015,730	+		ABIE51_RS13895	0.64	-0.0
3,015,731	-		ABIE51_RS13895	0.64	+0.5
3,015,731	-		ABIE51_RS13895	0.64	+0.2
3,015,731	-		ABIE51_RS13895	0.64	-0.6
3,015,731	-		ABIE51_RS13895	0.64	-0.4
3,015,895	+		ABIE51_RS13895	0.72	+0.0
3,015,895	+		ABIE51_RS13895	0.72	+0.3
3,015,895	+		ABIE51_RS13895	0.72	+0.8
3,015,895	+		ABIE51_RS13895	0.72	-0.1
3,015,895	+		ABIE51_RS13895	0.72	-0.7
3,015,895	+		ABIE51_RS13895	0.72	-0.0
3,015,896	-		ABIE51_RS13895	0.72	-0.0
3,015,896	-		ABIE51_RS13895	0.72	+0.1
3,015,896	-		ABIE51_RS13895	0.72	-0.1
3,015,896	-		ABIE51_RS13895	0.72	+0.1
3,015,896	-		ABIE51_RS13895	0.72	+0.7
3,015,919	+		ABIE51_RS13895	0.73	-1.6
3,015,919	+		ABIE51_RS13895	0.73	-0.0
3,015,919	+		ABIE51_RS13895	0.73	+0.1
3,015,920	-		ABIE51_RS13895	0.73	+0.2
3,015,920	-		ABIE51_RS13895	0.73	+1.3
3,015,920	-		ABIE51_RS13895	0.73	-0.9
3,016,132	+		ABIE51_RS13895	0.83	+0.1
3,016,132	+		ABIE51_RS13895	0.83	-0.5
3,016,132	+		ABIE51_RS13895	0.83	-0.0
3,016,132	+		ABIE51_RS13895	0.83	+0.2
3,016,132	+		ABIE51_RS13895	0.83	-0.0
3,016,133	-		ABIE51_RS13895	0.83	+0.3
3,016,133	-		ABIE51_RS13895	0.83	+0.1
3,016,133	-		ABIE51_RS13895	0.83	+0.0
3,016,133	-		ABIE51_RS13895	0.83	-1.0
3,016,133	-		ABIE51_RS13895	0.83	+1.0
3,016,180	+		ABIE51_RS13895	0.85	+0.9
3,016,181	-		ABIE51_RS13895	0.86	+0.6
3,016,339	+				-1.2
3,016,340	-				-0.2
3,016,340	-				+0.4
3,016,340	-				+0.4
3,016,399	+				-0.0
3,016,492	+				+1.4
3,016,492	+				+0.4
3,016,493	-				-0.0
3,016,738	+		ABIE51_RS13900	0.51	+0.3
3,016,761	+		ABIE51_RS13900	0.55	+0.4
3,016,761	+		ABIE51_RS13900	0.55	+0.6
3,016,761	+		ABIE51_RS13900	0.55	+3.0
3,016,761	+		ABIE51_RS13900	0.55	+0.2
3,016,761	+		ABIE51_RS13900	0.55	-0.1
3,016,761	+		ABIE51_RS13900	0.55	+0.2
3,016,761	+		ABIE51_RS13900	0.55	+0.6
3,016,761	+		ABIE51_RS13900	0.55	+0.2
3,016,761	+		ABIE51_RS13900	0.55	-0.5
3,016,762	-		ABIE51_RS13900	0.55	-0.4
3,016,762	-		ABIE51_RS13900	0.55	+0.1
3,016,762	-		ABIE51_RS13900	0.55	-0.2
3,016,762	-		ABIE51_RS13900	0.55	-0.2
3,016,762	-		ABIE51_RS13900	0.55	-2.0
3,016,762	-		ABIE51_RS13900	0.55	-0.6
3,016,762	-		ABIE51_RS13900	0.55	+0.2
3,016,762	-		ABIE51_RS13900	0.55	+0.2
3,016,762	-		ABIE51_RS13900	0.55	+0.5
3,016,762	-		ABIE51_RS13900	0.55	-0.1
3,016,762	-		ABIE51_RS13900	0.55	-0.3
3,016,762	-		ABIE51_RS13900	0.55	+0.1
3,016,762	-		ABIE51_RS13900	0.55	+0.7
3,016,814	+		ABIE51_RS13900	0.66	-0.7
3,016,814	+		ABIE51_RS13900	0.66	-0.4
3,016,814	+		ABIE51_RS13900	0.66	-0.5
3,016,814	+		ABIE51_RS13900	0.66	-0.6
3,016,814	+		ABIE51_RS13900	0.66	+1.1
3,016,814	+		ABIE51_RS13900	0.66	-0.1
3,016,814	+		ABIE51_RS13900	0.66	+0.5
3,016,815	-		ABIE51_RS13900	0.66	+0.3
3,016,815	-		ABIE51_RS13900	0.66	-0.3
3,016,928	+		ABIE51_RS13900	0.89	+0.2
3,016,928	+		ABIE51_RS13900	0.89	-0.5
3,016,928	+		ABIE51_RS13900	0.89	+0.1
3,016,928	+		ABIE51_RS13900	0.89	-1.2
3,016,929	-		ABIE51_RS13900	0.89	-0.2
3,016,929	-		ABIE51_RS13900	0.89	+0.2
3,016,929	-		ABIE51_RS13900	0.89	-0.7
3,016,929	-		ABIE51_RS13900	0.89	-0.1
3,016,987	+				+0.9
3,016,987	+				+0.3
3,016,987	+				+1.0
3,016,987	+				-0.3
3,016,987	+				+0.1
3,016,987	+				-0.2
3,016,988	-				-0.1
3,016,988	-				-0.0
3,016,988	-				-0.3
3,016,988	-				-0.8
3,016,988	-				-0.1
3,016,988	-				+0.5
3,016,988	-				-1.6
3,016,994	+				-0.3
3,016,994	+				+0.6
3,016,995	-				-0.1
3,016,995	-				+0.4
3,016,995	-				+0.3
3,016,995	-				+0.0
3,016,995	-				+0.3
3,016,995	-				+0.3
3,017,029	+				-0.3
3,017,029	+				+0.4
3,017,029	+				+0.2
3,017,029	+				-1.2
3,017,029	+				-0.6
3,017,029	+				-1.3
3,017,029	+				-1.0
3,017,029	+				+0.8
3,017,029	+				-0.0
3,017,029	+				-0.4
3,017,029	+				-1.1
3,017,029	+				+0.5
3,017,029	+				+0.2
3,017,029	+				-0.6
3,017,029	+				+0.5
3,017,029	+				-1.1
3,017,030	-				-0.4
3,017,030	-				-0.3
3,017,030	-				-0.3
3,017,030	-				+1.0
3,017,030	-				+0.3
3,017,030	-				+0.1
3,017,030	-				+1.0
3,017,030	-				+0.5
3,017,030	-				+0.0
3,017,258	-		ABIE51_RS13905	0.63	-0.4
3,017,308	+		ABIE51_RS13905	0.77	-0.1
3,017,308	+		ABIE51_RS13905	0.77	-0.4
3,017,308	+		ABIE51_RS13905	0.77	+0.2
3,017,308	+		ABIE51_RS13905	0.77	-0.7
3,017,308	+		ABIE51_RS13905	0.77	-0.0
3,017,308	+		ABIE51_RS13905	0.77	-1.3
3,017,308	+		ABIE51_RS13905	0.77	+0.0
3,017,308	+		ABIE51_RS13905	0.77	-0.3
3,017,308	+		ABIE51_RS13905	0.77	+0.7
3,017,308	+		ABIE51_RS13905	0.77	+0.2
3,017,309	-		ABIE51_RS13905	0.77	+0.0
3,017,309	-		ABIE51_RS13905	0.77	-0.7
3,017,309	-		ABIE51_RS13905	0.77	-0.2
3,017,309	-		ABIE51_RS13905	0.77	-2.7
3,017,309	-		ABIE51_RS13905	0.77	+1.0
3,017,309	-		ABIE51_RS13905	0.77	-0.7
3,017,309	-		ABIE51_RS13905	0.77	-0.7
3,017,309	-		ABIE51_RS13905	0.77	-0.0
3,017,309	-		ABIE51_RS13905	0.77	+0.2
3,017,309	-		ABIE51_RS13905	0.77	+0.1
3,017,317	+		ABIE51_RS13905	0.79	-0.0
3,017,317	+		ABIE51_RS13905	0.79	+0.7
3,017,318	-		ABIE51_RS13905	0.79	-1.6
3,017,318	-		ABIE51_RS13905	0.79	-0.8
3,017,384	+				+0.1
3,017,384	+				+0.2
3,017,385	-				-0.1
3,017,385	-				+0.3
3,017,385	-				+0.6
3,017,385	-				+0.4
3,017,398	+				-0.0
3,017,398	+				+0.7
3,017,398	+				+1.7
3,017,398	+				+0.1
3,017,398	+				+0.5
3,017,398	+				-0.0
3,017,399	-				-0.1
3,017,399	-				+1.6
3,017,399	-				-0.3