Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02825 and ABIE51_RS02830 are separated by 43 nucleotides ABIE51_RS02830 and ABIE51_RS02835 are separated by 265 nucleotides
ABIE51_RS02825: ABIE51_RS02825 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 625,933 to 626,688
_RS02825
ABIE51_RS02830: ABIE51_RS02830 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 626,732 to 627,577
_RS02830
ABIE51_RS02835: ABIE51_RS02835 - LacI family DNA-binding transcriptional regulator, at 627,843 to 628,937
_RS02835
Position (kb) 626
627
628 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 625.982 kb on + strand at 625.982 kb on + strand at 625.983 kb on - strand at 626.126 kb on + strand, within ABIE51_RS02825 at 626.127 kb on - strand, within ABIE51_RS02825 at 626.127 kb on - strand, within ABIE51_RS02825 at 626.734 kb on - strand at 626.772 kb on + strand at 626.811 kb on + strand at 626.811 kb on + strand at 626.811 kb on + strand at 626.812 kb on - strand at 626.812 kb on - strand at 626.947 kb on - strand, within ABIE51_RS02830 at 626.947 kb on - strand, within ABIE51_RS02830 at 626.952 kb on + strand, within ABIE51_RS02830 at 626.952 kb on + strand, within ABIE51_RS02830 at 626.952 kb on + strand, within ABIE51_RS02830 at 627.069 kb on + strand, within ABIE51_RS02830 at 627.075 kb on + strand, within ABIE51_RS02830 at 627.076 kb on - strand, within ABIE51_RS02830 at 627.252 kb on + strand, within ABIE51_RS02830 at 627.252 kb on + strand, within ABIE51_RS02830 at 627.252 kb on + strand, within ABIE51_RS02830 at 627.253 kb on - strand, within ABIE51_RS02830 at 627.253 kb on - strand, within ABIE51_RS02830 at 627.253 kb on - strand, within ABIE51_RS02830 at 627.253 kb on - strand, within ABIE51_RS02830 at 627.457 kb on - strand, within ABIE51_RS02830 at 627.501 kb on + strand at 627.501 kb on + strand at 627.502 kb on - strand at 627.561 kb on + strand at 627.562 kb on - strand at 627.562 kb on - strand at 627.639 kb on + strand at 627.639 kb on + strand at 627.687 kb on + strand at 627.844 kb on + strand at 627.844 kb on + strand at 627.845 kb on - strand at 627.845 kb on - strand at 627.845 kb on - strand at 627.845 kb on - strand at 627.845 kb on - strand at 628.093 kb on + strand, within ABIE51_RS02835 at 628.093 kb on + strand, within ABIE51_RS02835 at 628.093 kb on + strand, within ABIE51_RS02835 at 628.094 kb on - strand, within ABIE51_RS02835 at 628.163 kb on - strand, within ABIE51_RS02835 at 628.196 kb on - strand, within ABIE51_RS02835 at 628.342 kb on + strand, within ABIE51_RS02835 at 628.342 kb on + strand, within ABIE51_RS02835 at 628.342 kb on + strand, within ABIE51_RS02835 at 628.343 kb on - strand, within ABIE51_RS02835 at 628.430 kb on - strand, within ABIE51_RS02835 at 628.430 kb on - strand, within ABIE51_RS02835 at 628.546 kb on + strand, within ABIE51_RS02835 at 628.546 kb on + strand, within ABIE51_RS02835 at 628.546 kb on + strand, within ABIE51_RS02835 at 628.547 kb on - strand, within ABIE51_RS02835 at 628.547 kb on - strand, within ABIE51_RS02835
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 625,982 + +0.1 625,982 + -0.3 625,983 - +0.5 626,126 + ABIE51_RS02825 0.26 +0.4 626,127 - ABIE51_RS02825 0.26 +1.4 626,127 - ABIE51_RS02825 0.26 +0.5 626,734 - +1.0 626,772 + -0.6 626,811 + -0.0 626,811 + -0.6 626,811 + -0.4 626,812 - +0.9 626,812 - -0.3 626,947 - ABIE51_RS02830 0.25 +0.7 626,947 - ABIE51_RS02830 0.25 +0.4 626,952 + ABIE51_RS02830 0.26 +0.2 626,952 + ABIE51_RS02830 0.26 -1.8 626,952 + ABIE51_RS02830 0.26 -0.5 627,069 + ABIE51_RS02830 0.40 +0.2 627,075 + ABIE51_RS02830 0.41 +0.1 627,076 - ABIE51_RS02830 0.41 -0.5 627,252 + ABIE51_RS02830 0.61 +0.7 627,252 + ABIE51_RS02830 0.61 -1.2 627,252 + ABIE51_RS02830 0.61 -0.5 627,253 - ABIE51_RS02830 0.62 -0.5 627,253 - ABIE51_RS02830 0.62 +0.2 627,253 - ABIE51_RS02830 0.62 -2.9 627,253 - ABIE51_RS02830 0.62 +1.0 627,457 - ABIE51_RS02830 0.86 -0.5 627,501 + +0.2 627,501 + -1.3 627,502 - -0.8 627,561 + -0.1 627,562 - -0.1 627,562 - +0.2 627,639 + +0.1 627,639 + -1.3 627,687 + -0.5 627,844 + +0.1 627,844 + +1.3 627,845 - -0.0 627,845 - -1.2 627,845 - -0.1 627,845 - +0.3 627,845 - +1.2 628,093 + ABIE51_RS02835 0.23 -0.9 628,093 + ABIE51_RS02835 0.23 -1.0 628,093 + ABIE51_RS02835 0.23 -1.1 628,094 - ABIE51_RS02835 0.23 +0.1 628,163 - ABIE51_RS02835 0.29 -0.2 628,196 - ABIE51_RS02835 0.32 +0.6 628,342 + ABIE51_RS02835 0.46 -0.6 628,342 + ABIE51_RS02835 0.46 -0.3 628,342 + ABIE51_RS02835 0.46 -0.6 628,343 - ABIE51_RS02835 0.46 -0.5 628,430 - ABIE51_RS02835 0.54 -0.8 628,430 - ABIE51_RS02835 0.54 -0.6 628,546 + ABIE51_RS02835 0.64 -0.0 628,546 + ABIE51_RS02835 0.64 +0.3 628,546 + ABIE51_RS02835 0.64 -1.1 628,547 - ABIE51_RS02835 0.64 -1.0 628,547 - ABIE51_RS02835 0.64 -0.4
Or see this region's nucleotide sequence