Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03625

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03635 and HMPREF1058_RS03630 are separated by 185 nucleotidesHMPREF1058_RS03630 and HMPREF1058_RS03625 overlap by 1 nucleotidesHMPREF1058_RS03625 and HMPREF1058_RS03620 are separated by 25 nucleotides HMPREF1058_RS03635: HMPREF1058_RS03635 - YjbH domain-containing protein, at 233,415 to 234,224 _RS03635 HMPREF1058_RS03630: HMPREF1058_RS03630 - WecB/TagA/CpsF family glycosyltransferase, at 234,410 to 235,123 _RS03630 HMPREF1058_RS03625: HMPREF1058_RS03625 - polysaccharide pyruvyl transferase family protein, at 235,123 to 236,199 _RS03625 HMPREF1058_RS03620: HMPREF1058_RS03620 - glycosyltransferase, at 236,225 to 237,211 _RS03620 Position (kb) 235 236 237Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 234.253 kb on - strandat 234.342 kb on + strandat 234.343 kb on - strandat 234.349 kb on - strandat 234.475 kb on + strandat 234.475 kb on + strandat 234.476 kb on - strandat 234.495 kb on + strand, within HMPREF1058_RS03630at 234.495 kb on + strand, within HMPREF1058_RS03630at 234.495 kb on + strand, within HMPREF1058_RS03630at 234.496 kb on - strand, within HMPREF1058_RS03630at 234.592 kb on + strand, within HMPREF1058_RS03630at 234.592 kb on + strand, within HMPREF1058_RS03630at 234.665 kb on + strand, within HMPREF1058_RS03630at 234.696 kb on - strand, within HMPREF1058_RS03630at 234.832 kb on + strand, within HMPREF1058_RS03630at 234.835 kb on - strand, within HMPREF1058_RS03630at 234.862 kb on - strand, within HMPREF1058_RS03630at 234.971 kb on - strand, within HMPREF1058_RS03630at 234.990 kb on - strand, within HMPREF1058_RS03630at 235.042 kb on - strand, within HMPREF1058_RS03630at 235.101 kb on + strandat 235.105 kb on + strandat 235.146 kb on - strandat 235.197 kb on - strandat 235.231 kb on - strand, within HMPREF1058_RS03625at 235.375 kb on - strand, within HMPREF1058_RS03625at 235.380 kb on - strand, within HMPREF1058_RS03625at 235.393 kb on - strand, within HMPREF1058_RS03625at 235.405 kb on + strand, within HMPREF1058_RS03625at 235.542 kb on - strand, within HMPREF1058_RS03625at 235.558 kb on - strand, within HMPREF1058_RS03625at 235.596 kb on + strand, within HMPREF1058_RS03625at 235.596 kb on + strand, within HMPREF1058_RS03625at 235.671 kb on + strand, within HMPREF1058_RS03625at 235.711 kb on + strand, within HMPREF1058_RS03625at 235.748 kb on - strand, within HMPREF1058_RS03625at 235.758 kb on + strand, within HMPREF1058_RS03625at 235.758 kb on + strand, within HMPREF1058_RS03625at 235.784 kb on + strand, within HMPREF1058_RS03625at 235.788 kb on + strand, within HMPREF1058_RS03625at 235.868 kb on - strand, within HMPREF1058_RS03625at 235.868 kb on - strand, within HMPREF1058_RS03625at 235.899 kb on - strand, within HMPREF1058_RS03625at 235.909 kb on - strand, within HMPREF1058_RS03625at 235.934 kb on + strand, within HMPREF1058_RS03625at 236.034 kb on + strand, within HMPREF1058_RS03625at 236.086 kb on - strand, within HMPREF1058_RS03625at 236.104 kb on - strandat 236.110 kb on + strandat 236.160 kb on - strandat 236.191 kb on + strandat 236.218 kb on + strandat 236.218 kb on + strandat 236.218 kb on + strandat 236.239 kb on - strandat 236.239 kb on - strandat 236.248 kb on + strandat 236.259 kb on - strandat 236.276 kb on - strandat 236.283 kb on - strandat 236.350 kb on - strand, within HMPREF1058_RS03620at 236.379 kb on + strand, within HMPREF1058_RS03620at 236.380 kb on - strand, within HMPREF1058_RS03620at 236.380 kb on - strand, within HMPREF1058_RS03620at 236.384 kb on - strand, within HMPREF1058_RS03620at 236.392 kb on - strand, within HMPREF1058_RS03620at 236.395 kb on + strand, within HMPREF1058_RS03620at 236.396 kb on - strand, within HMPREF1058_RS03620at 236.426 kb on - strand, within HMPREF1058_RS03620at 236.427 kb on + strand, within HMPREF1058_RS03620at 236.427 kb on + strand, within HMPREF1058_RS03620at 236.428 kb on - strand, within HMPREF1058_RS03620at 236.428 kb on - strand, within HMPREF1058_RS03620at 236.431 kb on + strand, within HMPREF1058_RS03620at 236.431 kb on + strand, within HMPREF1058_RS03620at 236.431 kb on + strand, within HMPREF1058_RS03620at 236.432 kb on - strand, within HMPREF1058_RS03620at 236.443 kb on + strand, within HMPREF1058_RS03620at 236.488 kb on + strand, within HMPREF1058_RS03620at 236.533 kb on + strand, within HMPREF1058_RS03620at 236.596 kb on - strand, within HMPREF1058_RS03620at 236.597 kb on + strand, within HMPREF1058_RS03620at 236.692 kb on + strand, within HMPREF1058_RS03620at 236.759 kb on + strand, within HMPREF1058_RS03620at 236.760 kb on - strand, within HMPREF1058_RS03620at 236.801 kb on + strand, within HMPREF1058_RS03620at 236.801 kb on + strand, within HMPREF1058_RS03620at 236.802 kb on - strand, within HMPREF1058_RS03620at 236.803 kb on + strand, within HMPREF1058_RS03620at 236.803 kb on + strand, within HMPREF1058_RS03620at 236.803 kb on + strand, within HMPREF1058_RS03620at 236.803 kb on + strand, within HMPREF1058_RS03620at 236.804 kb on - strand, within HMPREF1058_RS03620at 236.804 kb on - strand, within HMPREF1058_RS03620at 236.842 kb on + strand, within HMPREF1058_RS03620at 236.846 kb on - strand, within HMPREF1058_RS03620at 236.867 kb on + strand, within HMPREF1058_RS03620at 236.970 kb on - strand, within HMPREF1058_RS03620at 236.970 kb on - strand, within HMPREF1058_RS03620at 236.972 kb on - strand, within HMPREF1058_RS03620at 236.999 kb on + strand, within HMPREF1058_RS03620at 237.000 kb on - strand, within HMPREF1058_RS03620at 237.000 kb on - strand, within HMPREF1058_RS03620at 237.116 kb on - strandat 237.132 kb on - strandat 237.155 kb on - strandat 237.182 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2
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234,253 - -0.6
234,342 + -0.8
234,343 - +1.0
234,349 - -1.9
234,475 + -0.2
234,475 + -3.9
234,476 - -1.7
234,495 + HMPREF1058_RS03630 0.12 -0.2
234,495 + HMPREF1058_RS03630 0.12 -0.3
234,495 + HMPREF1058_RS03630 0.12 +1.7
234,496 - HMPREF1058_RS03630 0.12 -0.6
234,592 + HMPREF1058_RS03630 0.25 -2.2
234,592 + HMPREF1058_RS03630 0.25 -2.9
234,665 + HMPREF1058_RS03630 0.36 -3.3
234,696 - HMPREF1058_RS03630 0.40 -1.9
234,832 + HMPREF1058_RS03630 0.59 +0.4
234,835 - HMPREF1058_RS03630 0.60 +0.4
234,862 - HMPREF1058_RS03630 0.63 -1.6
234,971 - HMPREF1058_RS03630 0.79 +0.4
234,990 - HMPREF1058_RS03630 0.81 -1.2
235,042 - HMPREF1058_RS03630 0.89 -0.6
235,101 + +0.1
235,105 + -0.6
235,146 - +0.4
235,197 - +1.7
235,231 - HMPREF1058_RS03625 0.10 +0.4
235,375 - HMPREF1058_RS03625 0.23 +0.2
235,380 - HMPREF1058_RS03625 0.24 -0.4
235,393 - HMPREF1058_RS03625 0.25 -2.8
235,405 + HMPREF1058_RS03625 0.26 -2.4
235,542 - HMPREF1058_RS03625 0.39 -1.0
235,558 - HMPREF1058_RS03625 0.40 -3.7
235,596 + HMPREF1058_RS03625 0.44 -1.6
235,596 + HMPREF1058_RS03625 0.44 -0.6
235,671 + HMPREF1058_RS03625 0.51 -0.3
235,711 + HMPREF1058_RS03625 0.55 +1.7
235,748 - HMPREF1058_RS03625 0.58 -2.9
235,758 + HMPREF1058_RS03625 0.59 -1.6
235,758 + HMPREF1058_RS03625 0.59 -4.0
235,784 + HMPREF1058_RS03625 0.61 -0.6
235,788 + HMPREF1058_RS03625 0.62 -3.2
235,868 - HMPREF1058_RS03625 0.69 -0.6
235,868 - HMPREF1058_RS03625 0.69 -1.6
235,899 - HMPREF1058_RS03625 0.72 -0.5
235,909 - HMPREF1058_RS03625 0.73 -0.5
235,934 + HMPREF1058_RS03625 0.75 +1.6
236,034 + HMPREF1058_RS03625 0.85 -1.5
236,086 - HMPREF1058_RS03625 0.89 +2.0
236,104 - -0.6
236,110 + -2.2
236,160 - -1.2
236,191 + -0.6
236,218 + -0.0
236,218 + +0.1
236,218 + -2.2
236,239 - +3.1
236,239 - -0.6
236,248 + +0.4
236,259 - -1.2
236,276 - +0.3
236,283 - -0.6
236,350 - HMPREF1058_RS03620 0.13 +0.4
236,379 + HMPREF1058_RS03620 0.16 -1.6
236,380 - HMPREF1058_RS03620 0.16 -1.2
236,380 - HMPREF1058_RS03620 0.16 +1.7
236,384 - HMPREF1058_RS03620 0.16 -0.2
236,392 - HMPREF1058_RS03620 0.17 -0.6
236,395 + HMPREF1058_RS03620 0.17 +0.4
236,396 - HMPREF1058_RS03620 0.17 -0.6
236,426 - HMPREF1058_RS03620 0.20 -1.4
236,427 + HMPREF1058_RS03620 0.20 -0.5
236,427 + HMPREF1058_RS03620 0.20 +2.4
236,428 - HMPREF1058_RS03620 0.21 +0.4
236,428 - HMPREF1058_RS03620 0.21 -1.8
236,431 + HMPREF1058_RS03620 0.21 -1.9
236,431 + HMPREF1058_RS03620 0.21 -3.8
236,431 + HMPREF1058_RS03620 0.21 -1.2
236,432 - HMPREF1058_RS03620 0.21 -0.6
236,443 + HMPREF1058_RS03620 0.22 -2.4
236,488 + HMPREF1058_RS03620 0.27 +0.7
236,533 + HMPREF1058_RS03620 0.31 -2.9
236,596 - HMPREF1058_RS03620 0.38 -3.8
236,597 + HMPREF1058_RS03620 0.38 +0.4
236,692 + HMPREF1058_RS03620 0.47 -1.2
236,759 + HMPREF1058_RS03620 0.54 -4.0
236,760 - HMPREF1058_RS03620 0.54 -2.8
236,801 + HMPREF1058_RS03620 0.58 +0.1
236,801 + HMPREF1058_RS03620 0.58 +1.4
236,802 - HMPREF1058_RS03620 0.58 -1.9
236,803 + HMPREF1058_RS03620 0.59 -0.6
236,803 + HMPREF1058_RS03620 0.59 -0.2
236,803 + HMPREF1058_RS03620 0.59 -3.3
236,803 + HMPREF1058_RS03620 0.59 -1.3
236,804 - HMPREF1058_RS03620 0.59 +2.3
236,804 - HMPREF1058_RS03620 0.59 +0.4
236,842 + HMPREF1058_RS03620 0.63 -1.2
236,846 - HMPREF1058_RS03620 0.63 -1.6
236,867 + HMPREF1058_RS03620 0.65 +1.7
236,970 - HMPREF1058_RS03620 0.75 -3.3
236,970 - HMPREF1058_RS03620 0.75 -1.5
236,972 - HMPREF1058_RS03620 0.76 +0.2
236,999 + HMPREF1058_RS03620 0.78 -2.0
237,000 - HMPREF1058_RS03620 0.79 -1.2
237,000 - HMPREF1058_RS03620 0.79 -1.8
237,116 - +0.8
237,132 - -0.6
237,155 - -1.6
237,182 + +1.2

Or see this region's nucleotide sequence