Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10115 and HMPREF1058_RS10110 are separated by 1 nucleotides HMPREF1058_RS10110 and HMPREF1058_RS10105 are separated by 172 nucleotides HMPREF1058_RS10105 and HMPREF1058_RS10100 are separated by 32 nucleotides HMPREF1058_RS10100 and HMPREF1058_RS10095 overlap by 1 nucleotides HMPREF1058_RS10095 and HMPREF1058_RS10090 are separated by 391 nucleotides
HMPREF1058_RS10115: HMPREF1058_RS10115 - helix-turn-helix transcriptional regulator, at 721,250 to 721,801
_RS10115
HMPREF1058_RS10110: HMPREF1058_RS10110 - hypothetical protein, at 721,803 to 722,048
_RS10110
HMPREF1058_RS10105: HMPREF1058_RS10105 - helix-turn-helix transcriptional regulator, at 722,221 to 722,703
_RS10105
HMPREF1058_RS10100: HMPREF1058_RS10100 - hypothetical protein, at 722,736 to 722,948
_RS10100
HMPREF1058_RS10095: HMPREF1058_RS10095 - hypothetical protein, at 722,948 to 723,205
_RS10095
HMPREF1058_RS10090: HMPREF1058_RS10090 - phage integrase SAM-like domain-containing protein, at 723,597 to 724,940
_RS10090
Position (kb) 722
723 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 721.429 kb on + strand, within HMPREF1058_RS10115 at 721.557 kb on + strand, within HMPREF1058_RS10115 at 721.559 kb on + strand, within HMPREF1058_RS10115 at 721.656 kb on + strand, within HMPREF1058_RS10115 at 721.656 kb on + strand, within HMPREF1058_RS10115 at 721.723 kb on + strand, within HMPREF1058_RS10115 at 721.759 kb on + strand at 721.979 kb on + strand, within HMPREF1058_RS10110 at 722.012 kb on + strand, within HMPREF1058_RS10110 at 722.073 kb on + strand at 722.075 kb on + strand at 722.091 kb on + strand at 722.103 kb on + strand at 722.103 kb on + strand at 722.704 kb on + strand at 722.747 kb on + strand at 722.792 kb on + strand, within HMPREF1058_RS10100 at 722.792 kb on + strand, within HMPREF1058_RS10100 at 722.815 kb on + strand, within HMPREF1058_RS10100 at 722.849 kb on + strand, within HMPREF1058_RS10100 at 723.204 kb on - strand at 723.257 kb on + strand at 723.258 kb on - strand at 723.258 kb on - strand at 723.258 kb on - strand at 723.259 kb on + strand at 723.259 kb on + strand at 723.259 kb on + strand at 723.259 kb on + strand at 723.259 kb on + strand at 723.260 kb on - strand at 723.260 kb on - strand at 723.261 kb on + strand at 723.262 kb on - strand at 723.262 kb on - strand at 723.262 kb on - strand at 723.277 kb on + strand at 723.278 kb on - strand at 723.278 kb on - strand at 723.279 kb on + strand at 723.279 kb on + strand at 723.279 kb on + strand at 723.288 kb on + strand at 723.288 kb on + strand at 723.291 kb on + strand at 723.291 kb on + strand at 723.299 kb on + strand at 723.300 kb on - strand at 723.300 kb on - strand at 723.301 kb on + strand at 723.301 kb on + strand at 723.301 kb on + strand at 723.302 kb on - strand at 723.303 kb on + strand at 723.303 kb on + strand at 723.303 kb on + strand at 723.304 kb on - strand at 723.304 kb on - strand at 723.306 kb on - strand at 723.428 kb on - strand at 723.578 kb on + strand at 723.614 kb on + strand at 723.645 kb on + strand at 723.681 kb on - strand at 723.681 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 remove 721,429 + HMPREF1058_RS10115 0.32 +0.8 721,557 + HMPREF1058_RS10115 0.56 +2.7 721,559 + HMPREF1058_RS10115 0.56 -1.1 721,656 + HMPREF1058_RS10115 0.74 +0.8 721,656 + HMPREF1058_RS10115 0.74 +0.1 721,723 + HMPREF1058_RS10115 0.86 +1.0 721,759 + +1.3 721,979 + HMPREF1058_RS10110 0.72 +1.5 722,012 + HMPREF1058_RS10110 0.85 -0.4 722,073 + -4.8 722,075 + -2.4 722,091 + -2.7 722,103 + +1.0 722,103 + +1.0 722,704 + -2.7 722,747 + +0.8 722,792 + HMPREF1058_RS10100 0.26 -1.7 722,792 + HMPREF1058_RS10100 0.26 -2.1 722,815 + HMPREF1058_RS10100 0.37 -0.4 722,849 + HMPREF1058_RS10100 0.53 -0.8 723,204 - -3.6 723,257 + +0.2 723,258 - +2.5 723,258 - +1.2 723,258 - +1.3 723,259 + +0.1 723,259 + -0.5 723,259 + -0.4 723,259 + +2.3 723,259 + +0.1 723,260 - -1.1 723,260 - -2.7 723,261 + +1.2 723,262 - +1.3 723,262 - +0.9 723,262 - -0.3 723,277 + +0.2 723,278 - +0.0 723,278 - +1.5 723,279 + -3.9 723,279 + -2.9 723,279 + +1.8 723,288 + -1.7 723,288 + -2.2 723,291 + +2.7 723,291 + +1.0 723,299 + +0.5 723,300 - -2.1 723,300 - +0.3 723,301 + +2.2 723,301 + +0.7 723,301 + +0.4 723,302 - +0.4 723,303 + -0.8 723,303 + -0.3 723,303 + -0.0 723,304 - -1.1 723,304 - +1.6 723,306 - -2.7 723,428 - +1.3 723,578 + +1.6 723,614 + +0.3 723,645 + +2.1 723,681 - +0.6 723,681 - +0.7
Or see this region's nucleotide sequence