Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10790 and HMPREF1058_RS10785 are separated by 320 nucleotides HMPREF1058_RS10785 and HMPREF1058_RS10780 overlap by 29 nucleotides HMPREF1058_RS10780 and HMPREF1058_RS10775 are separated by 152 nucleotides HMPREF1058_RS10775 and HMPREF1058_RS10770 are separated by 18 nucleotides
HMPREF1058_RS10790: HMPREF1058_RS10790 - SusC/RagA family TonB-linked outer membrane protein, at 562,419 to 565,460
_RS10790
HMPREF1058_RS10785: HMPREF1058_RS10785 - RNA polymerase sigma-70 factor, at 565,781 to 566,326
_RS10785
HMPREF1058_RS10780: HMPREF1058_RS10780 - phosphoribosylglycinamide formyltransferase, at 566,298 to 566,876
_RS10780
HMPREF1058_RS10775: HMPREF1058_RS10775 - acyl carrier protein, at 567,029 to 567,265
_RS10775
HMPREF1058_RS10770: HMPREF1058_RS10770 - beta-ketoacyl-ACP synthase II, at 567,284 to 568,549
_RS10770
Position (kb) 566
567 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 565.313 kb on + strand at 565.319 kb on + strand at 565.326 kb on + strand at 565.362 kb on - strand at 565.461 kb on - strand at 565.509 kb on + strand at 565.613 kb on + strand at 565.658 kb on - strand at 565.749 kb on - strand at 565.781 kb on - strand at 565.853 kb on + strand, within HMPREF1058_RS10785 at 565.862 kb on + strand, within HMPREF1058_RS10785 at 565.923 kb on + strand, within HMPREF1058_RS10785 at 565.943 kb on + strand, within HMPREF1058_RS10785 at 565.943 kb on + strand, within HMPREF1058_RS10785 at 565.943 kb on + strand, within HMPREF1058_RS10785 at 565.944 kb on - strand, within HMPREF1058_RS10785 at 565.944 kb on - strand, within HMPREF1058_RS10785 at 565.944 kb on - strand, within HMPREF1058_RS10785 at 565.971 kb on + strand, within HMPREF1058_RS10785 at 565.998 kb on + strand, within HMPREF1058_RS10785 at 565.999 kb on - strand, within HMPREF1058_RS10785 at 566.002 kb on + strand, within HMPREF1058_RS10785 at 566.062 kb on - strand, within HMPREF1058_RS10785 at 566.073 kb on - strand, within HMPREF1058_RS10785 at 566.137 kb on + strand, within HMPREF1058_RS10785 at 566.137 kb on + strand, within HMPREF1058_RS10785 at 566.137 kb on + strand, within HMPREF1058_RS10785 at 566.138 kb on - strand, within HMPREF1058_RS10785 at 566.138 kb on - strand, within HMPREF1058_RS10785 at 566.138 kb on - strand, within HMPREF1058_RS10785 at 566.141 kb on + strand, within HMPREF1058_RS10785 at 566.141 kb on + strand, within HMPREF1058_RS10785 at 566.141 kb on + strand, within HMPREF1058_RS10785 at 566.141 kb on + strand, within HMPREF1058_RS10785 at 566.141 kb on + strand, within HMPREF1058_RS10785 at 566.142 kb on - strand, within HMPREF1058_RS10785 at 566.143 kb on + strand, within HMPREF1058_RS10785 at 566.184 kb on + strand, within HMPREF1058_RS10785 at 566.184 kb on + strand, within HMPREF1058_RS10785 at 566.186 kb on + strand, within HMPREF1058_RS10785 at 566.203 kb on + strand, within HMPREF1058_RS10785 at 566.387 kb on + strand, within HMPREF1058_RS10780 at 566.450 kb on - strand, within HMPREF1058_RS10780 at 566.460 kb on + strand, within HMPREF1058_RS10780 at 566.461 kb on - strand, within HMPREF1058_RS10780 at 566.462 kb on + strand, within HMPREF1058_RS10780 at 566.462 kb on + strand, within HMPREF1058_RS10780 at 566.503 kb on - strand, within HMPREF1058_RS10780 at 566.530 kb on + strand, within HMPREF1058_RS10780 at 566.535 kb on - strand, within HMPREF1058_RS10780 at 566.574 kb on - strand, within HMPREF1058_RS10780 at 566.581 kb on - strand, within HMPREF1058_RS10780 at 566.616 kb on + strand, within HMPREF1058_RS10780 at 566.640 kb on + strand, within HMPREF1058_RS10780 at 566.641 kb on - strand, within HMPREF1058_RS10780 at 566.645 kb on + strand, within HMPREF1058_RS10780 at 566.715 kb on - strand, within HMPREF1058_RS10780
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 remove 565,313 + +1.0 565,319 + -4.0 565,326 + +0.9 565,362 - +0.9 565,461 - -0.5 565,509 + +0.4 565,613 + -1.9 565,658 - +3.0 565,749 - -3.1 565,781 - +0.9 565,853 + HMPREF1058_RS10785 0.13 -0.4 565,862 + HMPREF1058_RS10785 0.15 +1.2 565,923 + HMPREF1058_RS10785 0.26 -0.3 565,943 + HMPREF1058_RS10785 0.30 -0.3 565,943 + HMPREF1058_RS10785 0.30 -2.6 565,943 + HMPREF1058_RS10785 0.30 +0.6 565,944 - HMPREF1058_RS10785 0.30 +3.2 565,944 - HMPREF1058_RS10785 0.30 +0.6 565,944 - HMPREF1058_RS10785 0.30 -0.6 565,971 + HMPREF1058_RS10785 0.35 +1.1 565,998 + HMPREF1058_RS10785 0.40 +0.8 565,999 - HMPREF1058_RS10785 0.40 +0.5 566,002 + HMPREF1058_RS10785 0.40 -0.8 566,062 - HMPREF1058_RS10785 0.51 -0.3 566,073 - HMPREF1058_RS10785 0.53 -1.0 566,137 + HMPREF1058_RS10785 0.65 +0.3 566,137 + HMPREF1058_RS10785 0.65 +2.8 566,137 + HMPREF1058_RS10785 0.65 +1.2 566,138 - HMPREF1058_RS10785 0.65 -1.1 566,138 - HMPREF1058_RS10785 0.65 -0.2 566,138 - HMPREF1058_RS10785 0.65 -0.1 566,141 + HMPREF1058_RS10785 0.66 -1.3 566,141 + HMPREF1058_RS10785 0.66 +0.6 566,141 + HMPREF1058_RS10785 0.66 -1.9 566,141 + HMPREF1058_RS10785 0.66 -0.8 566,141 + HMPREF1058_RS10785 0.66 -0.1 566,142 - HMPREF1058_RS10785 0.66 +2.3 566,143 + HMPREF1058_RS10785 0.66 +0.7 566,184 + HMPREF1058_RS10785 0.74 -0.1 566,184 + HMPREF1058_RS10785 0.74 +0.5 566,186 + HMPREF1058_RS10785 0.74 +1.7 566,203 + HMPREF1058_RS10785 0.77 -2.3 566,387 + HMPREF1058_RS10780 0.15 +1.8 566,450 - HMPREF1058_RS10780 0.26 -0.5 566,460 + HMPREF1058_RS10780 0.28 -2.3 566,461 - HMPREF1058_RS10780 0.28 +1.0 566,462 + HMPREF1058_RS10780 0.28 -1.9 566,462 + HMPREF1058_RS10780 0.28 +1.3 566,503 - HMPREF1058_RS10780 0.35 -4.0 566,530 + HMPREF1058_RS10780 0.40 -1.3 566,535 - HMPREF1058_RS10780 0.41 +1.3 566,574 - HMPREF1058_RS10780 0.48 -0.9 566,581 - HMPREF1058_RS10780 0.49 -2.9 566,616 + HMPREF1058_RS10780 0.55 -0.8 566,640 + HMPREF1058_RS10780 0.59 -0.1 566,641 - HMPREF1058_RS10780 0.59 +3.8 566,645 + HMPREF1058_RS10780 0.60 +1.0 566,715 - HMPREF1058_RS10780 0.72 -0.2
Or see this region's nucleotide sequence