Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04165 and HMPREF1058_RS21530 are separated by 228 nucleotides HMPREF1058_RS21530 and HMPREF1058_RS04160 are separated by 39 nucleotides
HMPREF1058_RS04165: HMPREF1058_RS04165 - O-acetyl-ADP-ribose deacetylase, at 104,637 to 105,263
_RS04165
HMPREF1058_RS21530: HMPREF1058_RS21530 - left-handed beta-roll domain-containing protein, at 105,492 to 105,614
_RS21530
HMPREF1058_RS04160: HMPREF1058_RS04160 - sigma-54-dependent Fis family transcriptional regulator, at 105,654 to 106,991
_RS04160
Position (kb) 105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 104.513 kb on + strand at 104.531 kb on + strand at 104.569 kb on + strand at 104.594 kb on + strand at 104.652 kb on + strand at 104.714 kb on + strand, within HMPREF1058_RS04165 at 104.725 kb on - strand, within HMPREF1058_RS04165 at 104.771 kb on - strand, within HMPREF1058_RS04165 at 104.858 kb on - strand, within HMPREF1058_RS04165 at 104.956 kb on - strand, within HMPREF1058_RS04165 at 104.956 kb on - strand, within HMPREF1058_RS04165 at 105.045 kb on + strand, within HMPREF1058_RS04165 at 105.118 kb on + strand, within HMPREF1058_RS04165 at 105.118 kb on + strand, within HMPREF1058_RS04165 at 105.118 kb on + strand, within HMPREF1058_RS04165 at 105.119 kb on - strand, within HMPREF1058_RS04165 at 105.119 kb on - strand, within HMPREF1058_RS04165 at 105.119 kb on - strand, within HMPREF1058_RS04165 at 105.121 kb on - strand, within HMPREF1058_RS04165 at 105.121 kb on - strand, within HMPREF1058_RS04165 at 105.208 kb on + strand at 105.209 kb on - strand at 105.209 kb on - strand at 105.238 kb on + strand at 105.348 kb on + strand at 105.406 kb on + strand at 105.435 kb on - strand at 105.502 kb on + strand at 105.612 kb on + strand at 105.655 kb on + strand at 105.683 kb on - strand at 105.684 kb on + strand at 105.699 kb on + strand at 105.740 kb on + strand at 105.740 kb on + strand at 106.267 kb on - strand, within HMPREF1058_RS04160 at 106.404 kb on + strand, within HMPREF1058_RS04160
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 remove 104,513 + +3.3 104,531 + -2.3 104,569 + +2.1 104,594 + -0.5 104,652 + -1.9 104,714 + HMPREF1058_RS04165 0.12 -2.1 104,725 - HMPREF1058_RS04165 0.14 +3.1 104,771 - HMPREF1058_RS04165 0.21 +0.5 104,858 - HMPREF1058_RS04165 0.35 -2.7 104,956 - HMPREF1058_RS04165 0.51 +1.4 104,956 - HMPREF1058_RS04165 0.51 +0.3 105,045 + HMPREF1058_RS04165 0.65 +1.2 105,118 + HMPREF1058_RS04165 0.77 -1.1 105,118 + HMPREF1058_RS04165 0.77 +2.9 105,118 + HMPREF1058_RS04165 0.77 +1.7 105,119 - HMPREF1058_RS04165 0.77 -0.6 105,119 - HMPREF1058_RS04165 0.77 -0.5 105,119 - HMPREF1058_RS04165 0.77 +0.5 105,121 - HMPREF1058_RS04165 0.77 -3.0 105,121 - HMPREF1058_RS04165 0.77 +0.0 105,208 + -1.9 105,209 - -3.3 105,209 - +0.3 105,238 + +0.5 105,348 + -1.5 105,406 + -0.5 105,435 - -1.9 105,502 + -0.4 105,612 + -1.1 105,655 + -0.4 105,683 - -1.6 105,684 + -1.9 105,699 + +2.6 105,740 + +1.1 105,740 + -2.3 106,267 - HMPREF1058_RS04160 0.46 -2.9 106,404 + HMPREF1058_RS04160 0.56 +0.5
Or see this region's nucleotide sequence