Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119310 and HMPREF1058_RS18160 are separated by 107 nucleotides HMPREF1058_RS18160 and HMPREF1058_RS18155 are separated by 139 nucleotides HMPREF1058_RS18155 and HMPREF1058_RS18150 are separated by 9 nucleotides
HMPREF1058_RS0119310: HMPREF1058_RS0119310 - DUF3987 domain-containing protein, at 244,138 to 245,163
_RS0119310
HMPREF1058_RS18160: HMPREF1058_RS18160 - hypothetical protein, at 245,271 to 245,513
_RS18160
HMPREF1058_RS18155: HMPREF1058_RS18155 - helix-turn-helix transcriptional regulator, at 245,653 to 246,315
_RS18155
HMPREF1058_RS18150: HMPREF1058_RS18150 - Fic family protein, at 246,325 to 247,065
_RS18150
Position (kb) 245
246 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 244.288 kb on + strand, within HMPREF1058_RS0119310 at 244.289 kb on - strand, within HMPREF1058_RS0119310 at 244.289 kb on - strand, within HMPREF1058_RS0119310 at 244.315 kb on - strand, within HMPREF1058_RS0119310 at 244.363 kb on + strand, within HMPREF1058_RS0119310 at 244.410 kb on + strand, within HMPREF1058_RS0119310 at 244.516 kb on - strand, within HMPREF1058_RS0119310 at 244.564 kb on + strand, within HMPREF1058_RS0119310 at 244.618 kb on - strand, within HMPREF1058_RS0119310 at 244.620 kb on + strand, within HMPREF1058_RS0119310 at 244.621 kb on - strand, within HMPREF1058_RS0119310 at 244.623 kb on - strand, within HMPREF1058_RS0119310 at 244.664 kb on + strand, within HMPREF1058_RS0119310 at 244.884 kb on + strand, within HMPREF1058_RS0119310 at 244.931 kb on + strand, within HMPREF1058_RS0119310 at 244.931 kb on + strand at 244.988 kb on - strand, within HMPREF1058_RS0119310 at 244.989 kb on + strand, within HMPREF1058_RS0119310 at 244.990 kb on - strand, within HMPREF1058_RS0119310 at 245.011 kb on + strand, within HMPREF1058_RS0119310 at 245.012 kb on - strand, within HMPREF1058_RS0119310 at 245.014 kb on - strand, within HMPREF1058_RS0119310 at 245.039 kb on + strand, within HMPREF1058_RS0119310 at 245.139 kb on + strand at 245.139 kb on + strand at 245.140 kb on - strand at 245.140 kb on - strand at 245.407 kb on + strand, within HMPREF1058_RS18160 at 245.407 kb on + strand, within HMPREF1058_RS18160 at 245.408 kb on - strand, within HMPREF1058_RS18160 at 245.408 kb on - strand, within HMPREF1058_RS18160 at 245.644 kb on + strand at 245.672 kb on + strand at 245.699 kb on + strand at 245.898 kb on + strand, within HMPREF1058_RS18155 at 246.081 kb on + strand, within HMPREF1058_RS18155 at 246.138 kb on + strand, within HMPREF1058_RS18155 at 246.142 kb on + strand, within HMPREF1058_RS18155 at 246.214 kb on - strand, within HMPREF1058_RS18155 at 246.214 kb on - strand, within HMPREF1058_RS18155 at 246.291 kb on + strand at 246.294 kb on + strand at 246.324 kb on + strand at 246.325 kb on - strand at 246.429 kb on - strand, within HMPREF1058_RS18150 at 246.437 kb on + strand, within HMPREF1058_RS18150 at 246.437 kb on + strand, within HMPREF1058_RS18150 at 246.448 kb on + strand, within HMPREF1058_RS18150 at 246.449 kb on - strand, within HMPREF1058_RS18150 at 246.449 kb on - strand, within HMPREF1058_RS18150 at 246.472 kb on - strand, within HMPREF1058_RS18150 at 246.478 kb on - strand, within HMPREF1058_RS18150 at 246.481 kb on + strand, within HMPREF1058_RS18150 at 246.481 kb on + strand, within HMPREF1058_RS18150 at 246.482 kb on - strand, within HMPREF1058_RS18150
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 remove 244,288 + HMPREF1058_RS0119310 0.15 -1.1 244,289 - HMPREF1058_RS0119310 0.15 -3.8 244,289 - HMPREF1058_RS0119310 0.15 -0.7 244,315 - HMPREF1058_RS0119310 0.17 +0.5 244,363 + HMPREF1058_RS0119310 0.22 -2.3 244,410 + HMPREF1058_RS0119310 0.27 -0.7 244,516 - HMPREF1058_RS0119310 0.37 +2.6 244,564 + HMPREF1058_RS0119310 0.42 +1.5 244,618 - HMPREF1058_RS0119310 0.47 -2.0 244,620 + HMPREF1058_RS0119310 0.47 +0.3 244,621 - HMPREF1058_RS0119310 0.47 -2.1 244,623 - HMPREF1058_RS0119310 0.47 +0.3 244,664 + HMPREF1058_RS0119310 0.51 -2.0 244,884 + HMPREF1058_RS0119310 0.73 +0.3 244,931 + HMPREF1058_RS0119310 0.77 +1.5 244,931 + -0.7 244,988 - HMPREF1058_RS0119310 0.83 +2.9 244,989 + HMPREF1058_RS0119310 0.83 +0.7 244,990 - HMPREF1058_RS0119310 0.83 +0.6 245,011 + HMPREF1058_RS0119310 0.85 -1.3 245,012 - HMPREF1058_RS0119310 0.85 -2.0 245,014 - HMPREF1058_RS0119310 0.85 +0.3 245,039 + HMPREF1058_RS0119310 0.88 +0.3 245,139 + -3.6 245,139 + -2.8 245,140 - +2.1 245,140 - -1.7 245,407 + HMPREF1058_RS18160 0.56 -2.5 245,407 + HMPREF1058_RS18160 0.56 -3.7 245,408 - HMPREF1058_RS18160 0.56 +1.2 245,408 - HMPREF1058_RS18160 0.56 -1.2 245,644 + -2.2 245,672 + +2.3 245,699 + -0.8 245,898 + HMPREF1058_RS18155 0.37 +1.2 246,081 + HMPREF1058_RS18155 0.65 +1.3 246,138 + HMPREF1058_RS18155 0.73 +2.9 246,142 + HMPREF1058_RS18155 0.74 +2.3 246,214 - HMPREF1058_RS18155 0.85 -2.0 246,214 - HMPREF1058_RS18155 0.85 +0.3 246,291 + +1.8 246,294 + -3.4 246,324 + +4.3 246,325 - -3.1 246,429 - HMPREF1058_RS18150 0.14 -1.3 246,437 + HMPREF1058_RS18150 0.15 -1.3 246,437 + HMPREF1058_RS18150 0.15 +0.3 246,448 + HMPREF1058_RS18150 0.17 +1.6 246,449 - HMPREF1058_RS18150 0.17 +0.3 246,449 - HMPREF1058_RS18150 0.17 -1.3 246,472 - HMPREF1058_RS18150 0.20 -2.0 246,478 - HMPREF1058_RS18150 0.21 -1.3 246,481 + HMPREF1058_RS18150 0.21 +1.2 246,481 + HMPREF1058_RS18150 0.21 -0.7 246,482 - HMPREF1058_RS18150 0.21 -1.7
Or see this region's nucleotide sequence