Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03715 and HMPREF1058_RS03710 are separated by 216 nucleotides HMPREF1058_RS03710 and HMPREF1058_RS03705 are separated by 418 nucleotides
HMPREF1058_RS03715: HMPREF1058_RS03715 - RluA family pseudouridine synthase, at 207,860 to 208,786
_RS03715
HMPREF1058_RS03710: HMPREF1058_RS03710 - hypothetical protein, at 209,003 to 209,683
_RS03710
HMPREF1058_RS03705: HMPREF1058_RS03705 - type II restriction endonuclease, at 210,102 to 211,559
_RS03705
Position (kb) 209
210 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 208.036 kb on + strand, within HMPREF1058_RS03715 at 208.036 kb on + strand, within HMPREF1058_RS03715 at 208.037 kb on - strand, within HMPREF1058_RS03715 at 208.057 kb on + strand, within HMPREF1058_RS03715 at 208.092 kb on + strand, within HMPREF1058_RS03715 at 208.158 kb on - strand, within HMPREF1058_RS03715 at 208.159 kb on + strand at 208.248 kb on - strand, within HMPREF1058_RS03715 at 208.248 kb on - strand, within HMPREF1058_RS03715 at 208.352 kb on - strand, within HMPREF1058_RS03715 at 208.356 kb on + strand, within HMPREF1058_RS03715 at 208.440 kb on + strand, within HMPREF1058_RS03715 at 208.469 kb on + strand, within HMPREF1058_RS03715 at 208.470 kb on - strand, within HMPREF1058_RS03715 at 208.488 kb on + strand, within HMPREF1058_RS03715 at 208.488 kb on + strand, within HMPREF1058_RS03715 at 208.504 kb on + strand, within HMPREF1058_RS03715 at 208.523 kb on + strand, within HMPREF1058_RS03715 at 208.585 kb on + strand, within HMPREF1058_RS03715 at 208.607 kb on - strand, within HMPREF1058_RS03715 at 208.683 kb on + strand, within HMPREF1058_RS03715 at 208.699 kb on - strand at 208.706 kb on + strand at 208.707 kb on - strand at 208.808 kb on - strand at 208.811 kb on + strand at 208.846 kb on + strand at 208.885 kb on + strand at 208.885 kb on + strand at 208.909 kb on + strand at 209.056 kb on + strand at 209.090 kb on + strand, within HMPREF1058_RS03710 at 209.164 kb on + strand, within HMPREF1058_RS03710 at 209.184 kb on + strand, within HMPREF1058_RS03710 at 209.187 kb on + strand, within HMPREF1058_RS03710 at 209.188 kb on - strand, within HMPREF1058_RS03710 at 209.191 kb on + strand, within HMPREF1058_RS03710 at 209.207 kb on - strand, within HMPREF1058_RS03710 at 209.209 kb on + strand, within HMPREF1058_RS03710 at 209.209 kb on + strand, within HMPREF1058_RS03710 at 209.211 kb on + strand, within HMPREF1058_RS03710 at 209.223 kb on + strand, within HMPREF1058_RS03710 at 209.224 kb on - strand, within HMPREF1058_RS03710 at 209.224 kb on - strand, within HMPREF1058_RS03710 at 209.237 kb on - strand, within HMPREF1058_RS03710 at 209.242 kb on + strand, within HMPREF1058_RS03710 at 209.265 kb on - strand, within HMPREF1058_RS03710 at 209.265 kb on - strand, within HMPREF1058_RS03710 at 209.287 kb on + strand, within HMPREF1058_RS03710 at 209.342 kb on - strand, within HMPREF1058_RS03710 at 209.416 kb on + strand, within HMPREF1058_RS03710 at 209.508 kb on + strand, within HMPREF1058_RS03710 at 209.575 kb on + strand, within HMPREF1058_RS03710 at 209.587 kb on - strand, within HMPREF1058_RS03710 at 209.616 kb on - strand at 209.744 kb on - strand at 209.763 kb on - strand at 209.802 kb on - strand at 209.802 kb on - strand at 209.828 kb on - strand at 209.907 kb on - strand at 209.907 kb on - strand at 209.934 kb on - strand at 210.027 kb on - strand at 210.078 kb on + strand at 210.078 kb on - strand at 210.082 kb on + strand at 210.089 kb on - strand at 210.101 kb on + strand at 210.138 kb on + strand at 210.168 kb on + strand at 210.169 kb on - strand at 210.179 kb on - strand at 210.184 kb on - strand at 210.199 kb on - strand at 210.222 kb on - strand at 210.290 kb on - strand, within HMPREF1058_RS03705 at 210.290 kb on - strand, within HMPREF1058_RS03705 at 210.310 kb on - strand, within HMPREF1058_RS03705 at 210.381 kb on - strand, within HMPREF1058_RS03705 at 210.382 kb on + strand, within HMPREF1058_RS03705 at 210.446 kb on - strand, within HMPREF1058_RS03705 at 210.461 kb on + strand, within HMPREF1058_RS03705 at 210.462 kb on - strand, within HMPREF1058_RS03705 at 210.462 kb on - strand, within HMPREF1058_RS03705 at 210.498 kb on - strand, within HMPREF1058_RS03705 at 210.575 kb on - strand, within HMPREF1058_RS03705 at 210.629 kb on + strand, within HMPREF1058_RS03705
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 remove 208,036 + HMPREF1058_RS03715 0.19 -1.1 208,036 + HMPREF1058_RS03715 0.19 +1.2 208,037 - HMPREF1058_RS03715 0.19 -2.7 208,057 + HMPREF1058_RS03715 0.21 +0.9 208,092 + HMPREF1058_RS03715 0.25 +0.5 208,158 - HMPREF1058_RS03715 0.32 +0.1 208,159 + -1.1 208,248 - HMPREF1058_RS03715 0.42 -1.9 208,248 - HMPREF1058_RS03715 0.42 -1.9 208,352 - HMPREF1058_RS03715 0.53 -0.1 208,356 + HMPREF1058_RS03715 0.54 -0.6 208,440 + HMPREF1058_RS03715 0.63 +0.5 208,469 + HMPREF1058_RS03715 0.66 -1.1 208,470 - HMPREF1058_RS03715 0.66 -0.5 208,488 + HMPREF1058_RS03715 0.68 +1.7 208,488 + HMPREF1058_RS03715 0.68 +0.6 208,504 + HMPREF1058_RS03715 0.69 +3.3 208,523 + HMPREF1058_RS03715 0.72 +1.3 208,585 + HMPREF1058_RS03715 0.78 +0.6 208,607 - HMPREF1058_RS03715 0.81 -0.2 208,683 + HMPREF1058_RS03715 0.89 -0.5 208,699 - +2.0 208,706 + +3.4 208,707 - -0.0 208,808 - +1.3 208,811 + +1.1 208,846 + -0.3 208,885 + +1.0 208,885 + +0.2 208,909 + -2.1 209,056 + +2.2 209,090 + HMPREF1058_RS03710 0.13 +1.0 209,164 + HMPREF1058_RS03710 0.24 -2.3 209,184 + HMPREF1058_RS03710 0.27 +2.6 209,187 + HMPREF1058_RS03710 0.27 +1.3 209,188 - HMPREF1058_RS03710 0.27 -2.1 209,191 + HMPREF1058_RS03710 0.28 +0.8 209,207 - HMPREF1058_RS03710 0.30 +3.5 209,209 + HMPREF1058_RS03710 0.30 -0.5 209,209 + HMPREF1058_RS03710 0.30 -0.5 209,211 + HMPREF1058_RS03710 0.31 +1.0 209,223 + HMPREF1058_RS03710 0.32 +0.2 209,224 - HMPREF1058_RS03710 0.32 -1.1 209,224 - HMPREF1058_RS03710 0.32 -0.5 209,237 - HMPREF1058_RS03710 0.34 +0.3 209,242 + HMPREF1058_RS03710 0.35 +1.5 209,265 - HMPREF1058_RS03710 0.38 -1.5 209,265 - HMPREF1058_RS03710 0.38 -2.1 209,287 + HMPREF1058_RS03710 0.42 -0.5 209,342 - HMPREF1058_RS03710 0.50 +1.7 209,416 + HMPREF1058_RS03710 0.61 +1.9 209,508 + HMPREF1058_RS03710 0.74 -2.3 209,575 + HMPREF1058_RS03710 0.84 +1.4 209,587 - HMPREF1058_RS03710 0.86 -2.1 209,616 - +1.9 209,744 - +1.6 209,763 - -0.7 209,802 - -0.8 209,802 - -2.1 209,828 - -0.0 209,907 - -4.2 209,907 - -2.1 209,934 - -0.9 210,027 - -1.5 210,078 + -2.3 210,078 - -1.1 210,082 + +0.8 210,089 - +1.7 210,101 + -1.1 210,138 + +1.6 210,168 + -1.5 210,169 - -1.1 210,179 - +0.5 210,184 - +1.5 210,199 - -0.1 210,222 - -0.5 210,290 - HMPREF1058_RS03705 0.13 +0.7 210,290 - HMPREF1058_RS03705 0.13 -0.5 210,310 - HMPREF1058_RS03705 0.14 -2.1 210,381 - HMPREF1058_RS03705 0.19 -1.5 210,382 + HMPREF1058_RS03705 0.19 -1.9 210,446 - HMPREF1058_RS03705 0.24 -1.9 210,461 + HMPREF1058_RS03705 0.25 -2.7 210,462 - HMPREF1058_RS03705 0.25 -0.5 210,462 - HMPREF1058_RS03705 0.25 -0.5 210,498 - HMPREF1058_RS03705 0.27 +0.5 210,575 - HMPREF1058_RS03705 0.32 -1.1 210,629 + HMPREF1058_RS03705 0.36 +0.1
Or see this region's nucleotide sequence