Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03475 and HMPREF1058_RS03470 are separated by 16 nucleotides HMPREF1058_RS03470 and HMPREF1058_RS03465 are separated by 101 nucleotides
HMPREF1058_RS03475: HMPREF1058_RS03475 - radical SAM protein, at 272,888 to 273,961
_RS03475
HMPREF1058_RS03470: HMPREF1058_RS03470 - glycosyltransferase, at 273,978 to 275,156
_RS03470
HMPREF1058_RS03465: HMPREF1058_RS03465 - polysaccharide pyruvyl transferase family protein, at 275,258 to 276,364
_RS03465
Position (kb) 273
274
275
276 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 273.016 kb on + strand, within HMPREF1058_RS03475 at 273.415 kb on - strand, within HMPREF1058_RS03475 at 273.425 kb on - strand, within HMPREF1058_RS03475 at 273.500 kb on - strand, within HMPREF1058_RS03475 at 273.506 kb on - strand, within HMPREF1058_RS03475 at 273.906 kb on + strand at 273.919 kb on + strand at 273.920 kb on - strand at 274.009 kb on + strand at 274.010 kb on - strand at 274.028 kb on - strand at 274.059 kb on - strand at 274.463 kb on - strand, within HMPREF1058_RS03470 at 274.465 kb on + strand, within HMPREF1058_RS03470 at 274.465 kb on + strand, within HMPREF1058_RS03470 at 274.669 kb on - strand, within HMPREF1058_RS03470 at 274.691 kb on + strand, within HMPREF1058_RS03470 at 274.691 kb on + strand, within HMPREF1058_RS03470 at 274.734 kb on + strand, within HMPREF1058_RS03470 at 274.810 kb on - strand, within HMPREF1058_RS03470 at 274.875 kb on + strand, within HMPREF1058_RS03470 at 274.876 kb on - strand, within HMPREF1058_RS03470 at 274.876 kb on - strand, within HMPREF1058_RS03470 at 274.924 kb on - strand, within HMPREF1058_RS03470 at 275.002 kb on + strand, within HMPREF1058_RS03470 at 275.042 kb on + strand at 275.158 kb on + strand at 275.161 kb on - strand at 275.174 kb on - strand at 275.322 kb on - strand at 275.335 kb on + strand at 275.419 kb on + strand, within HMPREF1058_RS03465 at 275.523 kb on + strand, within HMPREF1058_RS03465 at 275.622 kb on - strand, within HMPREF1058_RS03465 at 275.622 kb on - strand, within HMPREF1058_RS03465 at 275.683 kb on + strand, within HMPREF1058_RS03465 at 275.706 kb on + strand, within HMPREF1058_RS03465 at 275.733 kb on + strand, within HMPREF1058_RS03465 at 275.762 kb on + strand, within HMPREF1058_RS03465 at 275.767 kb on + strand, within HMPREF1058_RS03465 at 275.810 kb on + strand, within HMPREF1058_RS03465 at 275.853 kb on + strand, within HMPREF1058_RS03465 at 275.935 kb on + strand, within HMPREF1058_RS03465 at 275.942 kb on - strand, within HMPREF1058_RS03465 at 276.026 kb on - strand, within HMPREF1058_RS03465 at 276.086 kb on + strand, within HMPREF1058_RS03465 at 276.087 kb on - strand, within HMPREF1058_RS03465 at 276.091 kb on - strand, within HMPREF1058_RS03465 at 276.116 kb on + strand, within HMPREF1058_RS03465 at 276.156 kb on + strand, within HMPREF1058_RS03465
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1 remove 273,016 + HMPREF1058_RS03475 0.12 +0.8 273,415 - HMPREF1058_RS03475 0.49 -0.7 273,425 - HMPREF1058_RS03475 0.50 -1.9 273,500 - HMPREF1058_RS03475 0.57 -0.4 273,506 - HMPREF1058_RS03475 0.58 +0.6 273,906 + +0.2 273,919 + +0.9 273,920 - +1.2 274,009 + +1.3 274,010 - +1.1 274,028 - -2.1 274,059 - +1.0 274,463 - HMPREF1058_RS03470 0.41 -1.8 274,465 + HMPREF1058_RS03470 0.41 +1.4 274,465 + HMPREF1058_RS03470 0.41 +1.5 274,669 - HMPREF1058_RS03470 0.59 -0.8 274,691 + HMPREF1058_RS03470 0.60 -2.1 274,691 + HMPREF1058_RS03470 0.60 -0.5 274,734 + HMPREF1058_RS03470 0.64 +1.5 274,810 - HMPREF1058_RS03470 0.71 +1.5 274,875 + HMPREF1058_RS03470 0.76 +0.9 274,876 - HMPREF1058_RS03470 0.76 +0.5 274,876 - HMPREF1058_RS03470 0.76 -2.1 274,924 - HMPREF1058_RS03470 0.80 +0.8 275,002 + HMPREF1058_RS03470 0.87 +2.3 275,042 + +1.7 275,158 + -3.1 275,161 - -1.4 275,174 - +0.2 275,322 - +0.2 275,335 + -0.8 275,419 + HMPREF1058_RS03465 0.15 +1.6 275,523 + HMPREF1058_RS03465 0.24 +1.2 275,622 - HMPREF1058_RS03465 0.33 +2.0 275,622 - HMPREF1058_RS03465 0.33 +2.8 275,683 + HMPREF1058_RS03465 0.38 -2.1 275,706 + HMPREF1058_RS03465 0.40 -0.8 275,733 + HMPREF1058_RS03465 0.43 -2.4 275,762 + HMPREF1058_RS03465 0.46 +1.8 275,767 + HMPREF1058_RS03465 0.46 +1.0 275,810 + HMPREF1058_RS03465 0.50 -1.0 275,853 + HMPREF1058_RS03465 0.54 +2.6 275,935 + HMPREF1058_RS03465 0.61 +0.4 275,942 - HMPREF1058_RS03465 0.62 -1.4 276,026 - HMPREF1058_RS03465 0.69 -0.8 276,086 + HMPREF1058_RS03465 0.75 +1.3 276,087 - HMPREF1058_RS03465 0.75 +2.7 276,091 - HMPREF1058_RS03465 0.75 +0.0 276,116 + HMPREF1058_RS03465 0.78 -0.2 276,156 + HMPREF1058_RS03465 0.81 +0.2
Or see this region's nucleotide sequence