Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17690 and HMPREF1058_RS17685 are separated by 204 nucleotides HMPREF1058_RS17685 and HMPREF1058_RS17680 are separated by 6 nucleotides HMPREF1058_RS17680 and HMPREF1058_RS17675 are separated by 532 nucleotides
HMPREF1058_RS17690: HMPREF1058_RS17690 - riboflavin synthase, at 368,392 to 368,994
_RS17690
HMPREF1058_RS17685: HMPREF1058_RS17685 - helix-turn-helix transcriptional regulator, at 369,199 to 369,774
_RS17685
HMPREF1058_RS17680: HMPREF1058_RS17680 - AMP-binding protein, at 369,781 to 371,433
_RS17680
HMPREF1058_RS17675: HMPREF1058_RS17675 - mechanosensitive ion channel, at 371,966 to 373,315
_RS17675
Position (kb) 369
370
371
372 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 369.037 kb on - strand at 369.157 kb on - strand at 369.159 kb on - strand at 369.305 kb on + strand, within HMPREF1058_RS17685 at 369.321 kb on + strand, within HMPREF1058_RS17685 at 369.322 kb on - strand, within HMPREF1058_RS17685 at 369.326 kb on + strand, within HMPREF1058_RS17685 at 369.492 kb on + strand, within HMPREF1058_RS17685 at 369.493 kb on - strand, within HMPREF1058_RS17685 at 369.616 kb on + strand, within HMPREF1058_RS17685 at 369.617 kb on - strand, within HMPREF1058_RS17685 at 369.642 kb on - strand, within HMPREF1058_RS17685 at 369.684 kb on + strand, within HMPREF1058_RS17685 at 369.689 kb on - strand, within HMPREF1058_RS17685 at 369.689 kb on - strand, within HMPREF1058_RS17685 at 369.689 kb on - strand, within HMPREF1058_RS17685 at 369.761 kb on - strand at 369.789 kb on - strand at 369.850 kb on + strand at 369.850 kb on + strand at 369.850 kb on + strand at 369.962 kb on + strand, within HMPREF1058_RS17680 at 370.076 kb on - strand, within HMPREF1058_RS17680 at 370.145 kb on + strand, within HMPREF1058_RS17680 at 370.146 kb on - strand, within HMPREF1058_RS17680 at 370.146 kb on - strand, within HMPREF1058_RS17680 at 370.156 kb on + strand, within HMPREF1058_RS17680 at 370.267 kb on + strand, within HMPREF1058_RS17680 at 370.268 kb on - strand, within HMPREF1058_RS17680 at 370.304 kb on + strand, within HMPREF1058_RS17680 at 370.418 kb on - strand, within HMPREF1058_RS17680 at 370.481 kb on + strand, within HMPREF1058_RS17680 at 370.482 kb on - strand, within HMPREF1058_RS17680 at 370.482 kb on - strand, within HMPREF1058_RS17680 at 370.482 kb on - strand, within HMPREF1058_RS17680 at 370.482 kb on - strand, within HMPREF1058_RS17680 at 370.520 kb on + strand, within HMPREF1058_RS17680 at 370.520 kb on + strand, within HMPREF1058_RS17680 at 370.521 kb on - strand, within HMPREF1058_RS17680 at 370.788 kb on - strand, within HMPREF1058_RS17680 at 370.851 kb on - strand, within HMPREF1058_RS17680 at 370.938 kb on - strand, within HMPREF1058_RS17680 at 371.070 kb on + strand, within HMPREF1058_RS17680 at 371.074 kb on + strand, within HMPREF1058_RS17680 at 371.125 kb on - strand, within HMPREF1058_RS17680 at 371.129 kb on - strand, within HMPREF1058_RS17680 at 371.141 kb on + strand, within HMPREF1058_RS17680 at 371.141 kb on + strand, within HMPREF1058_RS17680 at 371.180 kb on + strand, within HMPREF1058_RS17680 at 371.236 kb on - strand, within HMPREF1058_RS17680 at 371.323 kb on - strand at 371.428 kb on - strand at 371.431 kb on + strand at 371.492 kb on + strand at 371.552 kb on + strand at 371.614 kb on - strand at 371.619 kb on + strand at 371.620 kb on - strand at 371.622 kb on + strand at 371.622 kb on + strand at 371.625 kb on + strand at 371.646 kb on + strand at 371.646 kb on + strand at 371.646 kb on + strand at 371.651 kb on - strand at 371.676 kb on - strand at 371.880 kb on + strand at 371.880 kb on + strand at 371.884 kb on - strand at 371.887 kb on - strand at 371.887 kb on - strand at 371.901 kb on + strand at 371.902 kb on - strand at 371.948 kb on - strand at 371.967 kb on + strand at 372.057 kb on - strand at 372.060 kb on + strand at 372.061 kb on - strand at 372.153 kb on + strand, within HMPREF1058_RS17675 at 372.153 kb on + strand, within HMPREF1058_RS17675 at 372.286 kb on + strand, within HMPREF1058_RS17675 at 372.288 kb on + strand, within HMPREF1058_RS17675
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 remove 369,037 - +2.3 369,157 - +1.6 369,159 - +2.6 369,305 + HMPREF1058_RS17685 0.18 -1.5 369,321 + HMPREF1058_RS17685 0.21 -0.0 369,322 - HMPREF1058_RS17685 0.21 -2.0 369,326 + HMPREF1058_RS17685 0.22 +2.3 369,492 + HMPREF1058_RS17685 0.51 -2.0 369,493 - HMPREF1058_RS17685 0.51 +0.6 369,616 + HMPREF1058_RS17685 0.72 +0.3 369,617 - HMPREF1058_RS17685 0.73 +1.5 369,642 - HMPREF1058_RS17685 0.77 +1.9 369,684 + HMPREF1058_RS17685 0.84 -1.3 369,689 - HMPREF1058_RS17685 0.85 -1.8 369,689 - HMPREF1058_RS17685 0.85 +0.1 369,689 - HMPREF1058_RS17685 0.85 -1.2 369,761 - -0.7 369,789 - +0.8 369,850 + +1.4 369,850 + +0.3 369,850 + -1.7 369,962 + HMPREF1058_RS17680 0.11 +2.6 370,076 - HMPREF1058_RS17680 0.18 +0.1 370,145 + HMPREF1058_RS17680 0.22 +1.0 370,146 - HMPREF1058_RS17680 0.22 -0.2 370,146 - HMPREF1058_RS17680 0.22 +1.3 370,156 + HMPREF1058_RS17680 0.23 +2.9 370,267 + HMPREF1058_RS17680 0.29 -0.4 370,268 - HMPREF1058_RS17680 0.29 +1.4 370,304 + HMPREF1058_RS17680 0.32 +2.0 370,418 - HMPREF1058_RS17680 0.39 -2.7 370,481 + HMPREF1058_RS17680 0.42 -2.3 370,482 - HMPREF1058_RS17680 0.42 +0.3 370,482 - HMPREF1058_RS17680 0.42 -1.9 370,482 - HMPREF1058_RS17680 0.42 +0.3 370,482 - HMPREF1058_RS17680 0.42 -0.7 370,520 + HMPREF1058_RS17680 0.45 +0.6 370,520 + HMPREF1058_RS17680 0.45 -2.9 370,521 - HMPREF1058_RS17680 0.45 -2.5 370,788 - HMPREF1058_RS17680 0.61 -2.7 370,851 - HMPREF1058_RS17680 0.65 -2.4 370,938 - HMPREF1058_RS17680 0.70 +0.1 371,070 + HMPREF1058_RS17680 0.78 -2.3 371,074 + HMPREF1058_RS17680 0.78 +0.3 371,125 - HMPREF1058_RS17680 0.81 -0.6 371,129 - HMPREF1058_RS17680 0.82 +0.3 371,141 + HMPREF1058_RS17680 0.82 +1.5 371,141 + HMPREF1058_RS17680 0.82 +0.3 371,180 + HMPREF1058_RS17680 0.85 -0.8 371,236 - HMPREF1058_RS17680 0.88 -2.0 371,323 - +0.3 371,428 - -2.3 371,431 + +2.3 371,492 + +2.7 371,552 + -0.7 371,614 - -0.9 371,619 + +0.9 371,620 - -1.7 371,622 + +0.4 371,622 + -0.7 371,625 + +0.6 371,646 + +1.5 371,646 + -0.0 371,646 + -2.0 371,651 - +0.3 371,676 - +1.3 371,880 + +1.9 371,880 + -0.4 371,884 - +1.4 371,887 - -1.7 371,887 - -2.7 371,901 + +0.3 371,902 - +1.9 371,948 - +0.3 371,967 + +2.2 372,057 - -0.2 372,060 + -3.5 372,061 - -2.5 372,153 + HMPREF1058_RS17675 0.14 +0.7 372,153 + HMPREF1058_RS17675 0.14 -0.5 372,286 + HMPREF1058_RS17675 0.24 +1.9 372,288 + HMPREF1058_RS17675 0.24 -2.5
Or see this region's nucleotide sequence