Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03635 and HMPREF1058_RS03630 are separated by 185 nucleotides HMPREF1058_RS03630 and HMPREF1058_RS03625 overlap by 1 nucleotides HMPREF1058_RS03625 and HMPREF1058_RS03620 are separated by 25 nucleotides
HMPREF1058_RS03635: HMPREF1058_RS03635 - YjbH domain-containing protein, at 233,415 to 234,224
_RS03635
HMPREF1058_RS03630: HMPREF1058_RS03630 - WecB/TagA/CpsF family glycosyltransferase, at 234,410 to 235,123
_RS03630
HMPREF1058_RS03625: HMPREF1058_RS03625 - polysaccharide pyruvyl transferase family protein, at 235,123 to 236,199
_RS03625
HMPREF1058_RS03620: HMPREF1058_RS03620 - glycosyltransferase, at 236,225 to 237,211
_RS03620
Position (kb) 235
236
237 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 234.253 kb on - strand at 234.342 kb on + strand at 234.343 kb on - strand at 234.349 kb on - strand at 234.475 kb on + strand at 234.475 kb on + strand at 234.476 kb on - strand at 234.495 kb on + strand, within HMPREF1058_RS03630 at 234.495 kb on + strand, within HMPREF1058_RS03630 at 234.495 kb on + strand, within HMPREF1058_RS03630 at 234.496 kb on - strand, within HMPREF1058_RS03630 at 234.592 kb on + strand, within HMPREF1058_RS03630 at 234.592 kb on + strand, within HMPREF1058_RS03630 at 234.665 kb on + strand, within HMPREF1058_RS03630 at 234.696 kb on - strand, within HMPREF1058_RS03630 at 234.832 kb on + strand, within HMPREF1058_RS03630 at 234.835 kb on - strand, within HMPREF1058_RS03630 at 234.862 kb on - strand, within HMPREF1058_RS03630 at 234.971 kb on - strand, within HMPREF1058_RS03630 at 234.990 kb on - strand, within HMPREF1058_RS03630 at 235.042 kb on - strand, within HMPREF1058_RS03630 at 235.101 kb on + strand at 235.105 kb on + strand at 235.146 kb on - strand at 235.197 kb on - strand at 235.231 kb on - strand, within HMPREF1058_RS03625 at 235.375 kb on - strand, within HMPREF1058_RS03625 at 235.380 kb on - strand, within HMPREF1058_RS03625 at 235.393 kb on - strand, within HMPREF1058_RS03625 at 235.405 kb on + strand, within HMPREF1058_RS03625 at 235.542 kb on - strand, within HMPREF1058_RS03625 at 235.558 kb on - strand, within HMPREF1058_RS03625 at 235.596 kb on + strand, within HMPREF1058_RS03625 at 235.596 kb on + strand, within HMPREF1058_RS03625 at 235.671 kb on + strand, within HMPREF1058_RS03625 at 235.711 kb on + strand, within HMPREF1058_RS03625 at 235.748 kb on - strand, within HMPREF1058_RS03625 at 235.758 kb on + strand, within HMPREF1058_RS03625 at 235.758 kb on + strand, within HMPREF1058_RS03625 at 235.784 kb on + strand, within HMPREF1058_RS03625 at 235.788 kb on + strand, within HMPREF1058_RS03625 at 235.868 kb on - strand, within HMPREF1058_RS03625 at 235.868 kb on - strand, within HMPREF1058_RS03625 at 235.899 kb on - strand, within HMPREF1058_RS03625 at 235.909 kb on - strand, within HMPREF1058_RS03625 at 235.934 kb on + strand, within HMPREF1058_RS03625 at 236.034 kb on + strand, within HMPREF1058_RS03625 at 236.086 kb on - strand, within HMPREF1058_RS03625 at 236.104 kb on - strand at 236.110 kb on + strand at 236.160 kb on - strand at 236.191 kb on + strand at 236.218 kb on + strand at 236.218 kb on + strand at 236.218 kb on + strand at 236.239 kb on - strand at 236.239 kb on - strand at 236.248 kb on + strand at 236.259 kb on - strand at 236.276 kb on - strand at 236.283 kb on - strand at 236.350 kb on - strand, within HMPREF1058_RS03620 at 236.379 kb on + strand, within HMPREF1058_RS03620 at 236.380 kb on - strand, within HMPREF1058_RS03620 at 236.380 kb on - strand, within HMPREF1058_RS03620 at 236.384 kb on - strand, within HMPREF1058_RS03620 at 236.392 kb on - strand, within HMPREF1058_RS03620 at 236.395 kb on + strand, within HMPREF1058_RS03620 at 236.396 kb on - strand, within HMPREF1058_RS03620 at 236.426 kb on - strand, within HMPREF1058_RS03620 at 236.427 kb on + strand, within HMPREF1058_RS03620 at 236.427 kb on + strand, within HMPREF1058_RS03620 at 236.428 kb on - strand, within HMPREF1058_RS03620 at 236.428 kb on - strand, within HMPREF1058_RS03620 at 236.431 kb on + strand, within HMPREF1058_RS03620 at 236.431 kb on + strand, within HMPREF1058_RS03620 at 236.431 kb on + strand, within HMPREF1058_RS03620 at 236.432 kb on - strand, within HMPREF1058_RS03620 at 236.443 kb on + strand, within HMPREF1058_RS03620 at 236.488 kb on + strand, within HMPREF1058_RS03620 at 236.533 kb on + strand, within HMPREF1058_RS03620 at 236.596 kb on - strand, within HMPREF1058_RS03620 at 236.597 kb on + strand, within HMPREF1058_RS03620 at 236.692 kb on + strand, within HMPREF1058_RS03620 at 236.759 kb on + strand, within HMPREF1058_RS03620 at 236.760 kb on - strand, within HMPREF1058_RS03620 at 236.801 kb on + strand, within HMPREF1058_RS03620 at 236.801 kb on + strand, within HMPREF1058_RS03620 at 236.802 kb on - strand, within HMPREF1058_RS03620 at 236.803 kb on + strand, within HMPREF1058_RS03620 at 236.803 kb on + strand, within HMPREF1058_RS03620 at 236.803 kb on + strand, within HMPREF1058_RS03620 at 236.803 kb on + strand, within HMPREF1058_RS03620 at 236.804 kb on - strand, within HMPREF1058_RS03620 at 236.804 kb on - strand, within HMPREF1058_RS03620 at 236.842 kb on + strand, within HMPREF1058_RS03620 at 236.846 kb on - strand, within HMPREF1058_RS03620 at 236.867 kb on + strand, within HMPREF1058_RS03620 at 236.970 kb on - strand, within HMPREF1058_RS03620 at 236.970 kb on - strand, within HMPREF1058_RS03620 at 236.972 kb on - strand, within HMPREF1058_RS03620 at 236.999 kb on + strand, within HMPREF1058_RS03620 at 237.000 kb on - strand, within HMPREF1058_RS03620 at 237.000 kb on - strand, within HMPREF1058_RS03620 at 237.116 kb on - strand at 237.132 kb on - strand at 237.155 kb on - strand at 237.182 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 remove 234,253 - -0.4 234,342 + +1.2 234,343 - -1.4 234,349 - -3.3 234,475 + -1.0 234,475 + -3.7 234,476 - +1.7 234,495 + HMPREF1058_RS03630 0.12 -0.2 234,495 + HMPREF1058_RS03630 0.12 -2.4 234,495 + HMPREF1058_RS03630 0.12 -0.4 234,496 - HMPREF1058_RS03630 0.12 -0.4 234,592 + HMPREF1058_RS03630 0.25 -2.0 234,592 + HMPREF1058_RS03630 0.25 -2.7 234,665 + HMPREF1058_RS03630 0.36 -3.1 234,696 - HMPREF1058_RS03630 0.40 -1.7 234,832 + HMPREF1058_RS03630 0.59 +0.6 234,835 - HMPREF1058_RS03630 0.60 +0.6 234,862 - HMPREF1058_RS03630 0.63 -1.4 234,971 - HMPREF1058_RS03630 0.79 -0.4 234,990 - HMPREF1058_RS03630 0.81 -1.0 235,042 - HMPREF1058_RS03630 0.89 +1.7 235,101 + +1.9 235,105 + -0.4 235,146 - -1.0 235,197 - -0.4 235,231 - HMPREF1058_RS03625 0.10 +0.6 235,375 - HMPREF1058_RS03625 0.23 +0.8 235,380 - HMPREF1058_RS03625 0.24 -1.4 235,393 - HMPREF1058_RS03625 0.25 -2.6 235,405 + HMPREF1058_RS03625 0.26 +0.4 235,542 - HMPREF1058_RS03625 0.39 -2.9 235,558 - HMPREF1058_RS03625 0.40 -3.5 235,596 + HMPREF1058_RS03625 0.44 -1.4 235,596 + HMPREF1058_RS03625 0.44 -1.4 235,671 + HMPREF1058_RS03625 0.51 -2.4 235,711 + HMPREF1058_RS03625 0.55 -0.4 235,748 - HMPREF1058_RS03625 0.58 -2.7 235,758 + HMPREF1058_RS03625 0.59 -1.4 235,758 + HMPREF1058_RS03625 0.59 -1.2 235,784 + HMPREF1058_RS03625 0.61 -0.4 235,788 + HMPREF1058_RS03625 0.62 -3.0 235,868 - HMPREF1058_RS03625 0.69 +0.9 235,868 - HMPREF1058_RS03625 0.69 -1.4 235,899 - HMPREF1058_RS03625 0.72 -0.4 235,909 - HMPREF1058_RS03625 0.73 -0.7 235,934 + HMPREF1058_RS03625 0.75 -1.7 236,034 + HMPREF1058_RS03625 0.85 +0.9 236,086 - HMPREF1058_RS03625 0.89 +3.6 236,104 - -1.4 236,110 + -2.0 236,160 - -1.0 236,191 + -2.7 236,218 + -1.0 236,218 + +2.2 236,218 + -2.0 236,239 - +3.5 236,239 - -2.4 236,248 + +0.6 236,259 - -1.0 236,276 - -0.5 236,283 - -2.6 236,350 - HMPREF1058_RS03620 0.13 +0.6 236,379 + HMPREF1058_RS03620 0.16 -1.4 236,380 - HMPREF1058_RS03620 0.16 -1.0 236,380 - HMPREF1058_RS03620 0.16 +1.6 236,384 - HMPREF1058_RS03620 0.16 -2.0 236,392 - HMPREF1058_RS03620 0.17 -0.4 236,395 + HMPREF1058_RS03620 0.17 -1.0 236,396 - HMPREF1058_RS03620 0.17 -0.4 236,426 - HMPREF1058_RS03620 0.20 -0.2 236,427 + HMPREF1058_RS03620 0.20 +0.9 236,427 + HMPREF1058_RS03620 0.20 +0.6 236,428 - HMPREF1058_RS03620 0.21 +2.1 236,428 - HMPREF1058_RS03620 0.21 -2.6 236,431 + HMPREF1058_RS03620 0.21 -1.7 236,431 + HMPREF1058_RS03620 0.21 +1.0 236,431 + HMPREF1058_RS03620 0.21 -1.0 236,432 - HMPREF1058_RS03620 0.21 -0.4 236,443 + HMPREF1058_RS03620 0.22 -2.2 236,488 + HMPREF1058_RS03620 0.27 -1.4 236,533 + HMPREF1058_RS03620 0.31 +0.7 236,596 - HMPREF1058_RS03620 0.38 -0.5 236,597 + HMPREF1058_RS03620 0.38 +0.9 236,692 + HMPREF1058_RS03620 0.47 -1.0 236,759 + HMPREF1058_RS03620 0.54 -3.9 236,760 - HMPREF1058_RS03620 0.54 -2.6 236,801 + HMPREF1058_RS03620 0.58 -0.0 236,801 + HMPREF1058_RS03620 0.58 -1.0 236,802 - HMPREF1058_RS03620 0.58 +0.3 236,803 + HMPREF1058_RS03620 0.59 +2.8 236,803 + HMPREF1058_RS03620 0.59 -1.0 236,803 + HMPREF1058_RS03620 0.59 -3.1 236,803 + HMPREF1058_RS03620 0.59 -0.1 236,804 - HMPREF1058_RS03620 0.59 +0.0 236,804 - HMPREF1058_RS03620 0.59 +0.6 236,842 + HMPREF1058_RS03620 0.63 -1.0 236,846 - HMPREF1058_RS03620 0.63 -3.0 236,867 + HMPREF1058_RS03620 0.65 +0.6 236,970 - HMPREF1058_RS03620 0.75 -3.1 236,970 - HMPREF1058_RS03620 0.75 -3.3 236,972 - HMPREF1058_RS03620 0.76 +1.5 236,999 + HMPREF1058_RS03620 0.78 +0.1 237,000 - HMPREF1058_RS03620 0.79 -1.0 237,000 - HMPREF1058_RS03620 0.79 -4.4 237,116 - -3.1 237,132 - +2.3 237,155 - +1.6 237,182 + +0.4
Or see this region's nucleotide sequence