Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06715 and HMPREF1058_RS06710 are separated by 3 nucleotides HMPREF1058_RS06710 and HMPREF1058_RS06705 overlap by 16 nucleotides HMPREF1058_RS06705 and HMPREF1058_RS06700 are separated by 4 nucleotides
HMPREF1058_RS06715: HMPREF1058_RS06715 - glycosyltransferase, at 412,700 to 413,647
_RS06715
HMPREF1058_RS06710: HMPREF1058_RS06710 - DUF4422 domain-containing protein, at 413,651 to 414,475
_RS06710
HMPREF1058_RS06705: HMPREF1058_RS06705 - acyltransferase, at 414,460 to 415,071
_RS06705
HMPREF1058_RS06700: HMPREF1058_RS06700 - glycosyltransferase family 2 protein, at 415,076 to 416,236
_RS06700
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 413.462 kb on + strand, within HMPREF1058_RS06715 at 413.463 kb on - strand, within HMPREF1058_RS06715 at 413.463 kb on - strand, within HMPREF1058_RS06715 at 413.472 kb on - strand, within HMPREF1058_RS06715 at 413.611 kb on + strand at 413.616 kb on + strand at 413.616 kb on + strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.647 kb on + strand at 413.675 kb on - strand at 413.675 kb on - strand at 413.702 kb on - strand at 413.760 kb on + strand, within HMPREF1058_RS06710 at 413.784 kb on - strand, within HMPREF1058_RS06710 at 413.813 kb on + strand, within HMPREF1058_RS06710 at 413.932 kb on + strand, within HMPREF1058_RS06710 at 413.939 kb on - strand, within HMPREF1058_RS06710 at 413.939 kb on - strand, within HMPREF1058_RS06710 at 413.939 kb on - strand, within HMPREF1058_RS06710 at 413.941 kb on + strand, within HMPREF1058_RS06710 at 413.941 kb on + strand, within HMPREF1058_RS06710 at 414.064 kb on - strand, within HMPREF1058_RS06710 at 414.125 kb on + strand, within HMPREF1058_RS06710 at 414.176 kb on - strand, within HMPREF1058_RS06710 at 414.177 kb on - strand, within HMPREF1058_RS06710 at 414.259 kb on + strand, within HMPREF1058_RS06710 at 414.333 kb on - strand, within HMPREF1058_RS06710 at 414.333 kb on - strand, within HMPREF1058_RS06710 at 414.334 kb on + strand, within HMPREF1058_RS06710 at 414.334 kb on + strand, within HMPREF1058_RS06710 at 414.334 kb on + strand, within HMPREF1058_RS06710 at 414.338 kb on - strand, within HMPREF1058_RS06710 at 414.349 kb on + strand, within HMPREF1058_RS06710 at 414.354 kb on - strand, within HMPREF1058_RS06710 at 414.450 kb on - strand at 414.492 kb on + strand at 414.536 kb on + strand, within HMPREF1058_RS06705 at 414.545 kb on - strand, within HMPREF1058_RS06705 at 414.610 kb on + strand, within HMPREF1058_RS06705 at 414.629 kb on - strand, within HMPREF1058_RS06705 at 414.636 kb on + strand, within HMPREF1058_RS06705 at 414.636 kb on + strand, within HMPREF1058_RS06705 at 414.636 kb on + strand at 414.636 kb on + strand, within HMPREF1058_RS06705 at 414.637 kb on - strand, within HMPREF1058_RS06705 at 414.637 kb on - strand, within HMPREF1058_RS06705 at 414.715 kb on + strand, within HMPREF1058_RS06705 at 414.730 kb on + strand, within HMPREF1058_RS06705 at 414.924 kb on - strand, within HMPREF1058_RS06705 at 414.954 kb on - strand, within HMPREF1058_RS06705 at 415.052 kb on - strand at 415.063 kb on + strand at 415.064 kb on - strand at 415.156 kb on - strand at 415.185 kb on + strand at 415.185 kb on + strand at 415.185 kb on + strand at 415.189 kb on + strand at 415.189 kb on + strand at 415.218 kb on + strand, within HMPREF1058_RS06700 at 415.221 kb on - strand, within HMPREF1058_RS06700 at 415.240 kb on + strand, within HMPREF1058_RS06700 at 415.402 kb on + strand, within HMPREF1058_RS06700 at 415.514 kb on - strand, within HMPREF1058_RS06700 at 415.515 kb on + strand, within HMPREF1058_RS06700 at 415.515 kb on + strand, within HMPREF1058_RS06700 at 415.516 kb on - strand, within HMPREF1058_RS06700 at 415.516 kb on - strand, within HMPREF1058_RS06700 at 415.516 kb on - strand, within HMPREF1058_RS06700 at 415.770 kb on - strand, within HMPREF1058_RS06700 at 415.770 kb on - strand, within HMPREF1058_RS06700 at 415.839 kb on - strand, within HMPREF1058_RS06700 at 415.854 kb on + strand, within HMPREF1058_RS06700 at 415.929 kb on - strand, within HMPREF1058_RS06700 at 415.995 kb on - strand, within HMPREF1058_RS06700
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 remove 413,462 + HMPREF1058_RS06715 0.80 -0.2 413,463 - HMPREF1058_RS06715 0.80 +0.6 413,463 - HMPREF1058_RS06715 0.80 +0.3 413,472 - HMPREF1058_RS06715 0.81 +1.8 413,611 + -0.4 413,616 + -2.8 413,616 + -1.4 413,617 - -2.0 413,617 - -1.4 413,617 - +1.1 413,617 - +2.6 413,617 - -2.0 413,617 - -1.0 413,647 + -2.0 413,675 - +0.7 413,675 - +0.0 413,702 - +1.6 413,760 + HMPREF1058_RS06710 0.13 +1.6 413,784 - HMPREF1058_RS06710 0.16 -1.4 413,813 + HMPREF1058_RS06710 0.20 +3.7 413,932 + HMPREF1058_RS06710 0.34 -3.5 413,939 - HMPREF1058_RS06710 0.35 +0.8 413,939 - HMPREF1058_RS06710 0.35 +3.6 413,939 - HMPREF1058_RS06710 0.35 +2.2 413,941 + HMPREF1058_RS06710 0.35 -2.0 413,941 + HMPREF1058_RS06710 0.35 -1.4 414,064 - HMPREF1058_RS06710 0.50 +1.8 414,125 + HMPREF1058_RS06710 0.57 +1.8 414,176 - HMPREF1058_RS06710 0.64 -0.3 414,177 - HMPREF1058_RS06710 0.64 +1.1 414,259 + HMPREF1058_RS06710 0.74 +0.1 414,333 - HMPREF1058_RS06710 0.83 -0.4 414,333 - HMPREF1058_RS06710 0.83 -2.2 414,334 + HMPREF1058_RS06710 0.83 +0.6 414,334 + HMPREF1058_RS06710 0.83 -1.7 414,334 + HMPREF1058_RS06710 0.83 -3.3 414,338 - HMPREF1058_RS06710 0.83 +0.2 414,349 + HMPREF1058_RS06710 0.85 -1.4 414,354 - HMPREF1058_RS06710 0.85 -2.0 414,450 - +0.8 414,492 + -1.7 414,536 + HMPREF1058_RS06705 0.12 -2.4 414,545 - HMPREF1058_RS06705 0.14 -0.2 414,610 + HMPREF1058_RS06705 0.25 +0.8 414,629 - HMPREF1058_RS06705 0.28 -2.5 414,636 + HMPREF1058_RS06705 0.29 -1.4 414,636 + HMPREF1058_RS06705 0.29 -2.2 414,636 + -1.4 414,636 + HMPREF1058_RS06705 0.29 -0.1 414,637 - HMPREF1058_RS06705 0.29 +0.6 414,637 - HMPREF1058_RS06705 0.29 -1.7 414,715 + HMPREF1058_RS06705 0.42 -3.2 414,730 + HMPREF1058_RS06705 0.44 +0.2 414,924 - HMPREF1058_RS06705 0.76 -2.2 414,954 - HMPREF1058_RS06705 0.81 -1.5 415,052 - -2.5 415,063 + -2.0 415,064 - -1.7 415,156 - -0.5 415,185 + -3.3 415,185 + +0.6 415,185 + -3.0 415,189 + -1.0 415,189 + -0.4 415,218 + HMPREF1058_RS06700 0.12 -0.4 415,221 - HMPREF1058_RS06700 0.12 -2.4 415,240 + HMPREF1058_RS06700 0.14 -1.7 415,402 + HMPREF1058_RS06700 0.28 -0.5 415,514 - HMPREF1058_RS06700 0.38 +0.6 415,515 + HMPREF1058_RS06700 0.38 -0.9 415,515 + HMPREF1058_RS06700 0.38 +1.3 415,516 - HMPREF1058_RS06700 0.38 +0.8 415,516 - HMPREF1058_RS06700 0.38 +3.7 415,516 - HMPREF1058_RS06700 0.38 +0.0 415,770 - HMPREF1058_RS06700 0.60 -1.4 415,770 - HMPREF1058_RS06700 0.60 -1.0 415,839 - HMPREF1058_RS06700 0.66 -0.0 415,854 + HMPREF1058_RS06700 0.67 -2.5 415,929 - HMPREF1058_RS06700 0.73 +1.6 415,995 - HMPREF1058_RS06700 0.79 +0.7
Or see this region's nucleotide sequence