Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04605 and HMPREF1058_RS04600 are separated by 109 nucleotides HMPREF1058_RS04600 and HMPREF1058_RS04595 are separated by 39 nucleotides HMPREF1058_RS04595 and HMPREF1058_RS04590 overlap by 23 nucleotides HMPREF1058_RS04590 and HMPREF1058_RS04585 are separated by 258 nucleotides
HMPREF1058_RS04605: HMPREF1058_RS04605 - HNH endonuclease, at 2,359 to 2,856
_RS04605
HMPREF1058_RS04600: HMPREF1058_RS04600 - hypothetical protein, at 2,966 to 3,409
_RS04600
HMPREF1058_RS04595: HMPREF1058_RS04595 - VRR-NUC domain-containing protein, at 3,449 to 3,856
_RS04595
HMPREF1058_RS04590: HMPREF1058_RS04590 - DUF4494 family protein, at 3,834 to 4,469
_RS04590
HMPREF1058_RS04585: HMPREF1058_RS04585 - hypothetical protein, at 4,728 to 5,516
_RS04585
Position (kb) 3
4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 2.887 kb on + strand at 2.887 kb on + strand at 2.891 kb on + strand at 2.932 kb on + strand at 2.960 kb on + strand at 3.192 kb on + strand, within HMPREF1058_RS04600 at 3.317 kb on + strand, within HMPREF1058_RS04600 at 3.401 kb on + strand at 3.434 kb on + strand at 3.933 kb on + strand, within HMPREF1058_RS04590 at 4.048 kb on + strand, within HMPREF1058_RS04590 at 4.050 kb on + strand, within HMPREF1058_RS04590 at 4.050 kb on + strand, within HMPREF1058_RS04590 at 4.050 kb on + strand, within HMPREF1058_RS04590 at 4.460 kb on + strand at 4.511 kb on + strand at 5.034 kb on + strand, within HMPREF1058_RS04585 at 5.130 kb on + strand, within HMPREF1058_RS04585 at 5.168 kb on + strand, within HMPREF1058_RS04585 at 5.237 kb on + strand, within HMPREF1058_RS04585 at 5.237 kb on + strand, within HMPREF1058_RS04585 at 5.249 kb on + strand, within HMPREF1058_RS04585 at 5.413 kb on + strand, within HMPREF1058_RS04585
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 remove 2,887 + -1.8 2,887 + +2.1 2,891 + +1.3 2,932 + -1.7 2,960 + -1.3 3,192 + HMPREF1058_RS04600 0.51 -1.0 3,317 + HMPREF1058_RS04600 0.79 -3.5 3,401 + -1.0 3,434 + +2.8 3,933 + HMPREF1058_RS04590 0.16 +1.2 4,048 + HMPREF1058_RS04590 0.34 -1.8 4,050 + HMPREF1058_RS04590 0.34 -3.4 4,050 + HMPREF1058_RS04590 0.34 -0.6 4,050 + HMPREF1058_RS04590 0.34 +1.0 4,460 + +1.0 4,511 + +0.0 5,034 + HMPREF1058_RS04585 0.39 +0.7 5,130 + HMPREF1058_RS04585 0.51 +3.3 5,168 + HMPREF1058_RS04585 0.56 -1.8 5,237 + HMPREF1058_RS04585 0.65 -1.6 5,237 + HMPREF1058_RS04585 0.65 -0.4 5,249 + HMPREF1058_RS04585 0.66 -0.6 5,413 + HMPREF1058_RS04585 0.87 -1.3
Or see this region's nucleotide sequence