Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17355

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17360 and HMPREF1058_RS17355 are separated by 362 nucleotidesHMPREF1058_RS17355 and HMPREF1058_RS17350 are separated by 12 nucleotides HMPREF1058_RS17360: HMPREF1058_RS17360 - hypothetical protein, at 461,047 to 462,564 _RS17360 HMPREF1058_RS17355: HMPREF1058_RS17355 - glycosyltransferase family 4 protein, at 462,927 to 464,015 _RS17355 HMPREF1058_RS17350: HMPREF1058_RS17350 - hypothetical protein, at 464,028 to 465,281 _RS17350 Position (kb) 462 463 464 465Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 461.955 kb on + strand, within HMPREF1058_RS17360at 462.016 kb on - strand, within HMPREF1058_RS17360at 462.038 kb on - strand, within HMPREF1058_RS17360at 462.038 kb on - strand, within HMPREF1058_RS17360at 462.060 kb on + strand, within HMPREF1058_RS17360at 462.061 kb on - strand, within HMPREF1058_RS17360at 462.115 kb on - strand, within HMPREF1058_RS17360at 462.118 kb on + strand, within HMPREF1058_RS17360at 462.138 kb on - strand, within HMPREF1058_RS17360at 462.149 kb on + strand, within HMPREF1058_RS17360at 462.149 kb on + strand, within HMPREF1058_RS17360at 462.151 kb on + strand, within HMPREF1058_RS17360at 462.152 kb on - strand, within HMPREF1058_RS17360at 462.152 kb on - strand, within HMPREF1058_RS17360at 462.177 kb on + strand, within HMPREF1058_RS17360at 462.199 kb on + strand, within HMPREF1058_RS17360at 462.276 kb on - strand, within HMPREF1058_RS17360at 462.276 kb on - strand, within HMPREF1058_RS17360at 462.280 kb on + strand, within HMPREF1058_RS17360at 462.298 kb on - strand, within HMPREF1058_RS17360at 462.303 kb on - strand, within HMPREF1058_RS17360at 462.335 kb on + strand, within HMPREF1058_RS17360at 462.336 kb on - strand, within HMPREF1058_RS17360at 462.342 kb on - strand, within HMPREF1058_RS17360at 462.387 kb on + strand, within HMPREF1058_RS17360at 462.389 kb on + strand, within HMPREF1058_RS17360at 462.414 kb on - strandat 462.417 kb on + strandat 462.497 kb on + strandat 462.533 kb on + strandat 462.579 kb on + strandat 462.580 kb on - strandat 462.581 kb on + strandat 462.582 kb on - strandat 462.624 kb on - strandat 462.727 kb on - strandat 462.730 kb on + strandat 462.810 kb on - strandat 462.849 kb on + strandat 462.870 kb on - strandat 462.883 kb on + strandat 462.884 kb on - strandat 462.944 kb on - strandat 463.014 kb on - strandat 463.014 kb on - strandat 463.048 kb on + strand, within HMPREF1058_RS17355at 463.058 kb on - strand, within HMPREF1058_RS17355at 463.060 kb on - strand, within HMPREF1058_RS17355at 463.060 kb on - strand, within HMPREF1058_RS17355at 463.060 kb on - strand, within HMPREF1058_RS17355at 463.150 kb on - strand, within HMPREF1058_RS17355at 463.154 kb on + strand, within HMPREF1058_RS17355at 463.157 kb on - strand, within HMPREF1058_RS17355at 463.160 kb on - strand, within HMPREF1058_RS17355at 463.186 kb on - strand, within HMPREF1058_RS17355at 463.186 kb on - strand, within HMPREF1058_RS17355at 463.307 kb on - strand, within HMPREF1058_RS17355at 463.309 kb on - strand, within HMPREF1058_RS17355at 463.321 kb on + strand, within HMPREF1058_RS17355at 463.321 kb on + strand, within HMPREF1058_RS17355at 463.363 kb on - strand, within HMPREF1058_RS17355at 463.374 kb on + strand, within HMPREF1058_RS17355at 463.376 kb on + strand, within HMPREF1058_RS17355at 463.395 kb on + strand, within HMPREF1058_RS17355at 463.413 kb on - strand, within HMPREF1058_RS17355at 463.484 kb on + strand, within HMPREF1058_RS17355at 463.517 kb on - strand, within HMPREF1058_RS17355at 463.517 kb on - strand, within HMPREF1058_RS17355at 463.526 kb on - strand, within HMPREF1058_RS17355at 463.584 kb on - strand, within HMPREF1058_RS17355at 463.598 kb on + strand, within HMPREF1058_RS17355at 463.601 kb on + strand, within HMPREF1058_RS17355at 463.678 kb on + strand, within HMPREF1058_RS17355at 463.682 kb on + strand, within HMPREF1058_RS17355at 463.777 kb on + strand, within HMPREF1058_RS17355at 463.777 kb on + strand, within HMPREF1058_RS17355at 463.777 kb on + strand, within HMPREF1058_RS17355at 463.785 kb on - strand, within HMPREF1058_RS17355at 463.819 kb on - strand, within HMPREF1058_RS17355at 463.820 kb on + strand, within HMPREF1058_RS17355at 463.826 kb on + strand, within HMPREF1058_RS17355at 463.839 kb on - strand, within HMPREF1058_RS17355at 463.854 kb on - strand, within HMPREF1058_RS17355at 463.886 kb on + strand, within HMPREF1058_RS17355at 463.889 kb on - strand, within HMPREF1058_RS17355at 463.900 kb on + strand, within HMPREF1058_RS17355at 463.953 kb on - strandat 463.986 kb on - strandat 463.986 kb on - strandat 464.024 kb on + strandat 464.081 kb on - strandat 464.081 kb on - strandat 464.120 kb on + strandat 464.121 kb on - strandat 464.121 kb on - strandat 464.122 kb on + strandat 464.123 kb on - strandat 464.167 kb on + strand, within HMPREF1058_RS17350at 464.189 kb on - strand, within HMPREF1058_RS17350at 464.192 kb on + strand, within HMPREF1058_RS17350at 464.250 kb on - strand, within HMPREF1058_RS17350at 464.255 kb on - strand, within HMPREF1058_RS17350at 464.255 kb on - strand, within HMPREF1058_RS17350at 464.256 kb on + strand, within HMPREF1058_RS17350at 464.261 kb on - strand, within HMPREF1058_RS17350at 464.261 kb on - strand, within HMPREF1058_RS17350at 464.276 kb on + strand, within HMPREF1058_RS17350at 464.318 kb on - strand, within HMPREF1058_RS17350at 464.362 kb on - strand, within HMPREF1058_RS17350at 464.405 kb on - strand, within HMPREF1058_RS17350at 464.405 kb on - strand, within HMPREF1058_RS17350at 464.408 kb on - strand, within HMPREF1058_RS17350at 464.413 kb on + strand, within HMPREF1058_RS17350at 464.413 kb on + strand, within HMPREF1058_RS17350at 464.435 kb on + strand, within HMPREF1058_RS17350at 464.436 kb on - strand, within HMPREF1058_RS17350at 464.436 kb on - strand, within HMPREF1058_RS17350at 464.436 kb on - strand, within HMPREF1058_RS17350at 464.440 kb on - strand, within HMPREF1058_RS17350at 464.447 kb on + strand, within HMPREF1058_RS17350at 464.447 kb on + strand, within HMPREF1058_RS17350at 464.447 kb on + strand, within HMPREF1058_RS17350at 464.448 kb on - strand, within HMPREF1058_RS17350at 464.448 kb on - strand, within HMPREF1058_RS17350at 464.448 kb on - strand, within HMPREF1058_RS17350at 464.448 kb on - strand, within HMPREF1058_RS17350at 464.483 kb on + strand, within HMPREF1058_RS17350at 464.489 kb on + strand, within HMPREF1058_RS17350at 464.490 kb on - strand, within HMPREF1058_RS17350at 464.491 kb on + strand, within HMPREF1058_RS17350at 464.492 kb on - strand, within HMPREF1058_RS17350at 464.501 kb on - strand, within HMPREF1058_RS17350at 464.595 kb on - strand, within HMPREF1058_RS17350at 464.603 kb on + strand, within HMPREF1058_RS17350at 464.603 kb on + strand, within HMPREF1058_RS17350at 464.603 kb on + strand, within HMPREF1058_RS17350at 464.603 kb on + strand, within HMPREF1058_RS17350at 464.604 kb on - strand, within HMPREF1058_RS17350at 464.604 kb on - strand, within HMPREF1058_RS17350at 464.648 kb on + strand, within HMPREF1058_RS17350at 464.691 kb on - strand, within HMPREF1058_RS17350at 464.692 kb on + strand, within HMPREF1058_RS17350at 464.693 kb on - strand, within HMPREF1058_RS17350at 464.693 kb on - strand, within HMPREF1058_RS17350at 464.720 kb on + strand, within HMPREF1058_RS17350at 464.734 kb on + strand, within HMPREF1058_RS17350at 464.867 kb on - strand, within HMPREF1058_RS17350at 464.896 kb on - strand, within HMPREF1058_RS17350at 464.960 kb on + strand, within HMPREF1058_RS17350at 464.961 kb on - strand, within HMPREF1058_RS17350

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1
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461,955 + HMPREF1058_RS17360 0.60 +0.7
462,016 - HMPREF1058_RS17360 0.64 -0.9
462,038 - HMPREF1058_RS17360 0.65 +0.9
462,038 - HMPREF1058_RS17360 0.65 -1.0
462,060 + HMPREF1058_RS17360 0.67 -1.3
462,061 - HMPREF1058_RS17360 0.67 +1.3
462,115 - HMPREF1058_RS17360 0.70 -1.2
462,118 + HMPREF1058_RS17360 0.71 +1.7
462,138 - HMPREF1058_RS17360 0.72 +1.3
462,149 + HMPREF1058_RS17360 0.73 +0.8
462,149 + HMPREF1058_RS17360 0.73 +0.2
462,151 + HMPREF1058_RS17360 0.73 -1.6
462,152 - HMPREF1058_RS17360 0.73 -1.0
462,152 - HMPREF1058_RS17360 0.73 -1.0
462,177 + HMPREF1058_RS17360 0.74 -0.3
462,199 + HMPREF1058_RS17360 0.76 +0.6
462,276 - HMPREF1058_RS17360 0.81 +1.6
462,276 - HMPREF1058_RS17360 0.81 +1.0
462,280 + HMPREF1058_RS17360 0.81 +4.5
462,298 - HMPREF1058_RS17360 0.82 -0.6
462,303 - HMPREF1058_RS17360 0.83 +1.9
462,335 + HMPREF1058_RS17360 0.85 +1.0
462,336 - HMPREF1058_RS17360 0.85 +2.0
462,342 - HMPREF1058_RS17360 0.85 +1.1
462,387 + HMPREF1058_RS17360 0.88 -0.4
462,389 + HMPREF1058_RS17360 0.88 +0.6
462,414 - +0.3
462,417 + +1.0
462,497 + -1.0
462,533 + -2.3
462,579 + -0.4
462,580 - +0.5
462,581 + +0.0
462,582 - +0.8
462,624 - -0.3
462,727 - +0.6
462,730 + -2.5
462,810 - +1.0
462,849 + +0.5
462,870 - -1.0
462,883 + +0.4
462,884 - +2.0
462,944 - +0.5
463,014 - -1.0
463,014 - +0.0
463,048 + HMPREF1058_RS17355 0.11 +0.0
463,058 - HMPREF1058_RS17355 0.12 +3.4
463,060 - HMPREF1058_RS17355 0.12 -2.0
463,060 - HMPREF1058_RS17355 0.12 -1.6
463,060 - HMPREF1058_RS17355 0.12 +1.0
463,150 - HMPREF1058_RS17355 0.20 +0.0
463,154 + HMPREF1058_RS17355 0.21 +1.8
463,157 - HMPREF1058_RS17355 0.21 +1.7
463,160 - HMPREF1058_RS17355 0.21 +2.3
463,186 - HMPREF1058_RS17355 0.24 +1.5
463,186 - HMPREF1058_RS17355 0.24 -1.0
463,307 - HMPREF1058_RS17355 0.35 +2.0
463,309 - HMPREF1058_RS17355 0.35 +1.5
463,321 + HMPREF1058_RS17355 0.36 +0.1
463,321 + HMPREF1058_RS17355 0.36 +0.1
463,363 - HMPREF1058_RS17355 0.40 +0.2
463,374 + HMPREF1058_RS17355 0.41 +0.3
463,376 + HMPREF1058_RS17355 0.41 +0.1
463,395 + HMPREF1058_RS17355 0.43 -0.8
463,413 - HMPREF1058_RS17355 0.45 +1.3
463,484 + HMPREF1058_RS17355 0.51 +1.5
463,517 - HMPREF1058_RS17355 0.54 -2.8
463,517 - HMPREF1058_RS17355 0.54 -0.2
463,526 - HMPREF1058_RS17355 0.55 +2.3
463,584 - HMPREF1058_RS17355 0.60 +1.0
463,598 + HMPREF1058_RS17355 0.62 -0.8
463,601 + HMPREF1058_RS17355 0.62 -0.7
463,678 + HMPREF1058_RS17355 0.69 +1.5
463,682 + HMPREF1058_RS17355 0.69 +2.1
463,777 + HMPREF1058_RS17355 0.78 +3.0
463,777 + HMPREF1058_RS17355 0.78 +0.0
463,777 + HMPREF1058_RS17355 0.78 -1.4
463,785 - HMPREF1058_RS17355 0.79 +2.9
463,819 - HMPREF1058_RS17355 0.82 +0.8
463,820 + HMPREF1058_RS17355 0.82 +0.6
463,826 + HMPREF1058_RS17355 0.83 -2.4
463,839 - HMPREF1058_RS17355 0.84 +0.0
463,854 - HMPREF1058_RS17355 0.85 +0.5
463,886 + HMPREF1058_RS17355 0.88 -3.0
463,889 - HMPREF1058_RS17355 0.88 -1.0
463,900 + HMPREF1058_RS17355 0.89 +2.0
463,953 - +0.8
463,986 - -2.0
463,986 - +1.6
464,024 + +2.3
464,081 - -3.9
464,081 - +0.8
464,120 + +1.9
464,121 - -0.3
464,121 - +0.8
464,122 + +2.8
464,123 - -0.4
464,167 + HMPREF1058_RS17350 0.11 +2.3
464,189 - HMPREF1058_RS17350 0.13 -1.0
464,192 + HMPREF1058_RS17350 0.13 -0.8
464,250 - HMPREF1058_RS17350 0.18 -0.7
464,255 - HMPREF1058_RS17350 0.18 +1.8
464,255 - HMPREF1058_RS17350 0.18 +1.0
464,256 + HMPREF1058_RS17350 0.18 +0.0
464,261 - HMPREF1058_RS17350 0.19 +0.0
464,261 - HMPREF1058_RS17350 0.19 +0.8
464,276 + HMPREF1058_RS17350 0.20 -0.2
464,318 - HMPREF1058_RS17350 0.23 +1.7
464,362 - HMPREF1058_RS17350 0.27 -1.6
464,405 - HMPREF1058_RS17350 0.30 -1.6
464,405 - HMPREF1058_RS17350 0.30 +0.3
464,408 - HMPREF1058_RS17350 0.30 -1.6
464,413 + HMPREF1058_RS17350 0.31 +1.7
464,413 + HMPREF1058_RS17350 0.31 +0.5
464,435 + HMPREF1058_RS17350 0.32 -2.6
464,436 - HMPREF1058_RS17350 0.33 +0.0
464,436 - HMPREF1058_RS17350 0.33 -2.6
464,436 - HMPREF1058_RS17350 0.33 -2.0
464,440 - HMPREF1058_RS17350 0.33 +0.9
464,447 + HMPREF1058_RS17350 0.33 +0.0
464,447 + HMPREF1058_RS17350 0.33 +2.4
464,447 + HMPREF1058_RS17350 0.33 +1.3
464,448 - HMPREF1058_RS17350 0.33 +0.5
464,448 - HMPREF1058_RS17350 0.33 -1.6
464,448 - HMPREF1058_RS17350 0.33 -2.3
464,448 - HMPREF1058_RS17350 0.33 +1.8
464,483 + HMPREF1058_RS17350 0.36 +2.7
464,489 + HMPREF1058_RS17350 0.37 +0.3
464,490 - HMPREF1058_RS17350 0.37 +0.8
464,491 + HMPREF1058_RS17350 0.37 +2.1
464,492 - HMPREF1058_RS17350 0.37 -1.6
464,501 - HMPREF1058_RS17350 0.38 +2.4
464,595 - HMPREF1058_RS17350 0.45 +1.0
464,603 + HMPREF1058_RS17350 0.46 -0.7
464,603 + HMPREF1058_RS17350 0.46 +1.2
464,603 + HMPREF1058_RS17350 0.46 +2.2
464,603 + HMPREF1058_RS17350 0.46 -3.4
464,604 - HMPREF1058_RS17350 0.46 +0.3
464,604 - HMPREF1058_RS17350 0.46 -0.1
464,648 + HMPREF1058_RS17350 0.49 +0.7
464,691 - HMPREF1058_RS17350 0.53 +0.6
464,692 + HMPREF1058_RS17350 0.53 +0.7
464,693 - HMPREF1058_RS17350 0.53 +1.2
464,693 - HMPREF1058_RS17350 0.53 -1.0
464,720 + HMPREF1058_RS17350 0.55 -0.4
464,734 + HMPREF1058_RS17350 0.56 +0.3
464,867 - HMPREF1058_RS17350 0.67 +1.9
464,896 - HMPREF1058_RS17350 0.69 -3.3
464,960 + HMPREF1058_RS17350 0.74 -1.6
464,961 - HMPREF1058_RS17350 0.74 +0.8

Or see this region's nucleotide sequence