Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04490 and HMPREF1058_RS04485 are separated by 85 nucleotides HMPREF1058_RS04485 and HMPREF1058_RS04480 are separated by 662 nucleotides
HMPREF1058_RS04490: HMPREF1058_RS04490 - energy transducer TonB, at 18,215 to 19,645
_RS04490
HMPREF1058_RS04485: HMPREF1058_RS04485 - hypothetical protein, at 19,731 to 20,804
_RS04485
HMPREF1058_RS04480: HMPREF1058_RS04480 - TonB-dependent receptor, at 21,467 to 24,640
_RS04480
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 18.872 kb on - strand, within HMPREF1058_RS04490 at 18.889 kb on - strand, within HMPREF1058_RS04490 at 18.909 kb on + strand, within HMPREF1058_RS04490 at 18.916 kb on + strand, within HMPREF1058_RS04490 at 19.029 kb on - strand, within HMPREF1058_RS04490 at 19.096 kb on + strand, within HMPREF1058_RS04490 at 19.298 kb on + strand, within HMPREF1058_RS04490 at 19.304 kb on - strand, within HMPREF1058_RS04490 at 19.310 kb on + strand, within HMPREF1058_RS04490 at 19.311 kb on - strand, within HMPREF1058_RS04490 at 19.371 kb on + strand, within HMPREF1058_RS04490 at 19.372 kb on - strand, within HMPREF1058_RS04490 at 19.373 kb on + strand, within HMPREF1058_RS04490 at 19.373 kb on + strand, within HMPREF1058_RS04490 at 19.374 kb on - strand, within HMPREF1058_RS04490 at 19.409 kb on - strand, within HMPREF1058_RS04490 at 19.417 kb on + strand, within HMPREF1058_RS04490 at 19.497 kb on - strand, within HMPREF1058_RS04490 at 19.501 kb on - strand, within HMPREF1058_RS04490 at 19.502 kb on + strand, within HMPREF1058_RS04490 at 19.508 kb on + strand at 19.629 kb on - strand at 19.645 kb on + strand at 19.674 kb on + strand at 19.728 kb on + strand at 19.729 kb on - strand at 19.736 kb on + strand at 19.737 kb on - strand at 19.850 kb on - strand, within HMPREF1058_RS04485 at 19.861 kb on + strand, within HMPREF1058_RS04485 at 19.940 kb on - strand, within HMPREF1058_RS04485 at 19.940 kb on - strand, within HMPREF1058_RS04485 at 20.056 kb on - strand, within HMPREF1058_RS04485 at 20.138 kb on - strand, within HMPREF1058_RS04485 at 20.272 kb on - strand, within HMPREF1058_RS04485 at 20.406 kb on + strand, within HMPREF1058_RS04485 at 20.466 kb on - strand, within HMPREF1058_RS04485 at 20.488 kb on - strand, within HMPREF1058_RS04485 at 20.568 kb on + strand, within HMPREF1058_RS04485 at 20.711 kb on - strand at 20.944 kb on - strand at 20.947 kb on + strand at 20.967 kb on + strand at 20.968 kb on - strand at 20.983 kb on - strand at 21.000 kb on - strand at 21.005 kb on + strand at 21.006 kb on - strand at 21.006 kb on - strand at 21.006 kb on - strand at 21.039 kb on - strand at 21.129 kb on + strand at 21.129 kb on + strand at 21.130 kb on - strand at 21.130 kb on - strand at 21.152 kb on + strand at 21.152 kb on + strand at 21.172 kb on + strand at 21.172 kb on + strand at 21.182 kb on + strand at 21.196 kb on + strand at 21.196 kb on + strand at 21.256 kb on + strand at 21.264 kb on - strand at 21.299 kb on + strand at 21.389 kb on + strand at 21.500 kb on - strand at 21.504 kb on + strand at 21.561 kb on + strand at 21.595 kb on + strand at 21.712 kb on - strand at 21.752 kb on - strand at 21.768 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 remove 18,872 - HMPREF1058_RS04490 0.46 +0.3 18,889 - HMPREF1058_RS04490 0.47 +2.6 18,909 + HMPREF1058_RS04490 0.48 +0.5 18,916 + HMPREF1058_RS04490 0.49 +0.8 19,029 - HMPREF1058_RS04490 0.57 +0.9 19,096 + HMPREF1058_RS04490 0.62 +1.0 19,298 + HMPREF1058_RS04490 0.76 +1.0 19,304 - HMPREF1058_RS04490 0.76 +1.6 19,310 + HMPREF1058_RS04490 0.77 +1.3 19,311 - HMPREF1058_RS04490 0.77 -2.3 19,371 + HMPREF1058_RS04490 0.81 -1.7 19,372 - HMPREF1058_RS04490 0.81 -1.3 19,373 + HMPREF1058_RS04490 0.81 +1.1 19,373 + HMPREF1058_RS04490 0.81 +3.2 19,374 - HMPREF1058_RS04490 0.81 +0.7 19,409 - HMPREF1058_RS04490 0.83 +1.0 19,417 + HMPREF1058_RS04490 0.84 -2.5 19,497 - HMPREF1058_RS04490 0.90 +0.3 19,501 - HMPREF1058_RS04490 0.90 +1.6 19,502 + HMPREF1058_RS04490 0.90 -1.3 19,508 + -1.3 19,629 - +0.5 19,645 + -0.6 19,674 + -2.7 19,728 + +0.8 19,729 - +1.0 19,736 + +0.6 19,737 - -1.7 19,850 - HMPREF1058_RS04485 0.11 -1.0 19,861 + HMPREF1058_RS04485 0.12 +0.3 19,940 - HMPREF1058_RS04485 0.19 -0.7 19,940 - HMPREF1058_RS04485 0.19 -1.7 20,056 - HMPREF1058_RS04485 0.30 -0.7 20,138 - HMPREF1058_RS04485 0.38 +1.3 20,272 - HMPREF1058_RS04485 0.50 -2.5 20,406 + HMPREF1058_RS04485 0.63 -0.7 20,466 - HMPREF1058_RS04485 0.68 +0.0 20,488 - HMPREF1058_RS04485 0.70 +2.5 20,568 + HMPREF1058_RS04485 0.78 -0.7 20,711 - -2.5 20,944 - +0.8 20,947 + -2.3 20,967 + -0.2 20,968 - +0.3 20,983 - -0.1 21,000 - -1.3 21,005 + -2.3 21,006 - -1.3 21,006 - +0.3 21,006 - -0.7 21,039 - -0.0 21,129 + +0.3 21,129 + -1.5 21,130 - +0.3 21,130 - +0.3 21,152 + -1.4 21,152 + +1.3 21,172 + +0.7 21,172 + +1.3 21,182 + -1.7 21,196 + +0.7 21,196 + -0.8 21,256 + +1.1 21,264 - -0.7 21,299 + -3.2 21,389 + -0.6 21,500 - +0.8 21,504 + -0.7 21,561 + -0.5 21,595 + +1.1 21,712 - -3.0 21,752 - +2.9 21,768 + +0.3
Or see this region's nucleotide sequence