Experiment: LB no stress 48 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_705 and Pf6N2E2_706 are separated by 198 nucleotides Pf6N2E2_706 and Pf6N2E2_707 overlap by 17 nucleotides Pf6N2E2_707 and Pf6N2E2_708 are separated by 45 nucleotides
Pf6N2E2_705 - Cytochrome cd1 nitrite reductase (EC:1.7.2.1), at 809,043 to 810,722
_705
Pf6N2E2_706 - Nitric oxide reductase activation protein NorQ, at 810,921 to 811,724
_706
Pf6N2E2_707 - Nitric oxide reductase activation protein NorE, at 811,708 to 812,292
_707
Pf6N2E2_708 - hypothetical protein, at 812,338 to 812,562
_708
Position (kb) 810
811
812 Strain fitness (log2 ratio) -1
0
1
2 at 809.959 kb on + strand, within Pf6N2E2_705 at 809.959 kb on + strand, within Pf6N2E2_705 at 809.959 kb on + strand, within Pf6N2E2_705 at 809.959 kb on + strand, within Pf6N2E2_705 at 809.960 kb on - strand, within Pf6N2E2_705 at 810.100 kb on + strand, within Pf6N2E2_705 at 810.245 kb on + strand, within Pf6N2E2_705 at 810.430 kb on + strand, within Pf6N2E2_705 at 810.430 kb on + strand, within Pf6N2E2_705 at 810.430 kb on + strand, within Pf6N2E2_705 at 810.430 kb on + strand, within Pf6N2E2_705 at 810.431 kb on - strand, within Pf6N2E2_705 at 810.431 kb on - strand, within Pf6N2E2_705 at 810.451 kb on + strand, within Pf6N2E2_705 at 810.452 kb on - strand, within Pf6N2E2_705 at 810.671 kb on + strand at 810.672 kb on - strand at 810.758 kb on + strand at 810.758 kb on + strand at 810.758 kb on + strand at 810.758 kb on + strand at 810.759 kb on - strand at 810.759 kb on - strand at 810.759 kb on - strand at 810.963 kb on + strand at 810.963 kb on + strand at 810.963 kb on + strand at 810.963 kb on + strand at 810.963 kb on + strand at 810.964 kb on - strand at 810.964 kb on - strand at 811.102 kb on - strand, within Pf6N2E2_706 at 811.102 kb on - strand, within Pf6N2E2_706 at 811.102 kb on - strand, within Pf6N2E2_706 at 811.102 kb on - strand, within Pf6N2E2_706 at 811.221 kb on - strand, within Pf6N2E2_706 at 811.221 kb on - strand, within Pf6N2E2_706 at 811.228 kb on - strand, within Pf6N2E2_706 at 811.305 kb on + strand, within Pf6N2E2_706 at 811.306 kb on - strand, within Pf6N2E2_706 at 811.306 kb on - strand, within Pf6N2E2_706 at 811.365 kb on + strand, within Pf6N2E2_706 at 811.365 kb on + strand, within Pf6N2E2_706 at 811.365 kb on + strand, within Pf6N2E2_706 at 811.365 kb on + strand, within Pf6N2E2_706 at 811.366 kb on - strand, within Pf6N2E2_706 at 811.366 kb on - strand, within Pf6N2E2_706 at 811.469 kb on + strand, within Pf6N2E2_706 at 811.840 kb on + strand, within Pf6N2E2_707 at 811.841 kb on - strand, within Pf6N2E2_707 at 811.841 kb on - strand, within Pf6N2E2_707 at 812.017 kb on + strand, within Pf6N2E2_707 at 812.017 kb on + strand, within Pf6N2E2_707 at 812.018 kb on - strand, within Pf6N2E2_707 at 812.041 kb on + strand, within Pf6N2E2_707 at 812.041 kb on + strand, within Pf6N2E2_707 at 812.041 kb on + strand, within Pf6N2E2_707 at 812.042 kb on - strand, within Pf6N2E2_707 at 812.098 kb on + strand, within Pf6N2E2_707 at 812.098 kb on + strand, within Pf6N2E2_707 at 812.098 kb on + strand, within Pf6N2E2_707 at 812.099 kb on - strand, within Pf6N2E2_707 at 812.099 kb on - strand, within Pf6N2E2_707 at 812.230 kb on + strand, within Pf6N2E2_707 at 812.230 kb on + strand, within Pf6N2E2_707 at 812.278 kb on + strand at 812.279 kb on - strand at 812.279 kb on - strand at 812.279 kb on - strand at 812.560 kb on + strand at 812.561 kb on - strand at 812.561 kb on - strand at 812.614 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress 48 hours remove 809,959 + Pf6N2E2_705 0.55 +0.8 809,959 + Pf6N2E2_705 0.55 +0.7 809,959 + Pf6N2E2_705 0.55 +0.3 809,959 + Pf6N2E2_705 0.55 -1.5 809,960 - Pf6N2E2_705 0.55 +0.3 810,100 + Pf6N2E2_705 0.63 -1.1 810,245 + Pf6N2E2_705 0.72 +1.0 810,430 + Pf6N2E2_705 0.83 -0.4 810,430 + Pf6N2E2_705 0.83 +0.3 810,430 + Pf6N2E2_705 0.83 +0.1 810,430 + Pf6N2E2_705 0.83 +0.8 810,431 - Pf6N2E2_705 0.83 -0.2 810,431 - Pf6N2E2_705 0.83 -0.7 810,451 + Pf6N2E2_705 0.84 +1.0 810,452 - Pf6N2E2_705 0.84 +1.1 810,671 + +0.9 810,672 - +1.2 810,758 + -0.5 810,758 + +0.5 810,758 + -1.0 810,758 + +0.4 810,759 - -0.1 810,759 - +0.8 810,759 - +0.6 810,963 + +1.3 810,963 + +0.8 810,963 + +0.7 810,963 + +1.0 810,963 + -0.7 810,964 - -0.1 810,964 - -1.0 811,102 - Pf6N2E2_706 0.23 +1.9 811,102 - Pf6N2E2_706 0.23 +1.5 811,102 - Pf6N2E2_706 0.23 +0.9 811,102 - Pf6N2E2_706 0.23 +0.4 811,221 - Pf6N2E2_706 0.37 -1.0 811,221 - Pf6N2E2_706 0.37 +0.9 811,228 - Pf6N2E2_706 0.38 +2.1 811,305 + Pf6N2E2_706 0.48 +0.9 811,306 - Pf6N2E2_706 0.48 -1.0 811,306 - Pf6N2E2_706 0.48 -0.6 811,365 + Pf6N2E2_706 0.55 -1.0 811,365 + Pf6N2E2_706 0.55 +0.1 811,365 + Pf6N2E2_706 0.55 -0.0 811,365 + Pf6N2E2_706 0.55 +0.6 811,366 - Pf6N2E2_706 0.55 +0.4 811,366 - Pf6N2E2_706 0.55 +0.7 811,469 + Pf6N2E2_706 0.68 +1.4 811,840 + Pf6N2E2_707 0.23 +0.3 811,841 - Pf6N2E2_707 0.23 -0.2 811,841 - Pf6N2E2_707 0.23 +0.3 812,017 + Pf6N2E2_707 0.53 +1.2 812,017 + Pf6N2E2_707 0.53 +0.3 812,018 - Pf6N2E2_707 0.53 +0.3 812,041 + Pf6N2E2_707 0.57 -1.2 812,041 + Pf6N2E2_707 0.57 +0.5 812,041 + Pf6N2E2_707 0.57 +1.3 812,042 - Pf6N2E2_707 0.57 -0.1 812,098 + Pf6N2E2_707 0.67 +1.0 812,098 + Pf6N2E2_707 0.67 +0.0 812,098 + Pf6N2E2_707 0.67 +0.9 812,099 - Pf6N2E2_707 0.67 -1.5 812,099 - Pf6N2E2_707 0.67 -1.2 812,230 + Pf6N2E2_707 0.89 +0.5 812,230 + Pf6N2E2_707 0.89 -0.8 812,278 + -0.2 812,279 - +0.4 812,279 - +0.6 812,279 - -0.4 812,560 + -0.7 812,561 - -0.7 812,561 - +0.2 812,614 - +1.0
Or see this region's nucleotide sequence