Experiment: Nickel (II) chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0450 and Shew_0451 are separated by 24 nucleotides Shew_0451 and Shew_0452 are separated by 77 nucleotides Shew_0452 and Shew_0453 are separated by 13 nucleotides
Shew_0450: Shew_0450 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq), at 501,186 to 501,920
_0450
Shew_0451: Shew_0451 - hypothetical protein (RefSeq), at 501,945 to 502,352
_0451
Shew_0452: Shew_0452 - diguanylate cyclase (RefSeq), at 502,430 to 503,401
_0452
Shew_0453: Shew_0453 - response regulator receiver protein (RefSeq), at 503,415 to 504,410
_0453
Position (kb) 502
503
504 Strain fitness (log2 ratio) -1
0
1 at 501.451 kb on + strand, within Shew_0450 at 501.459 kb on - strand, within Shew_0450 at 501.462 kb on + strand, within Shew_0450 at 502.042 kb on + strand, within Shew_0451 at 502.225 kb on + strand, within Shew_0451 at 502.430 kb on + strand at 502.568 kb on + strand, within Shew_0452 at 502.916 kb on + strand, within Shew_0452 at 502.934 kb on + strand, within Shew_0452 at 503.335 kb on + strand at 503.342 kb on + strand at 503.343 kb on - strand at 503.402 kb on + strand at 503.421 kb on - strand at 503.430 kb on + strand at 503.719 kb on + strand, within Shew_0453 at 503.761 kb on - strand, within Shew_0453 at 504.038 kb on + strand, within Shew_0453 at 504.055 kb on + strand, within Shew_0453
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.5 mM remove 501,451 + Shew_0450 0.36 +0.1 501,459 - Shew_0450 0.37 +0.4 501,462 + Shew_0450 0.38 -0.3 502,042 + Shew_0451 0.24 -0.3 502,225 + Shew_0451 0.69 -0.1 502,430 + -0.2 502,568 + Shew_0452 0.14 -1.2 502,916 + Shew_0452 0.50 -0.0 502,934 + Shew_0452 0.52 -0.0 503,335 + +0.0 503,342 + -0.0 503,343 - +0.3 503,402 + +0.0 503,421 - -0.0 503,430 + -0.9 503,719 + Shew_0453 0.31 +0.1 503,761 - Shew_0453 0.35 +1.0 504,038 + Shew_0453 0.63 -0.5 504,055 + Shew_0453 0.64 +0.4
Or see this region's nucleotide sequence