Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3047
Experiment: m.b. Bacitracin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Bacitracin 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,214,892 | + | Dshi_3046 | 0.45 | +0.5 | |
3,215,072 | - | Dshi_3046 | 0.59 | -1.2 | |
3,215,332 | - | Dshi_3046 | 0.80 | -0.2 | |
3,215,389 | + | Dshi_3046 | 0.85 | -0.2 | |
3,215,534 | + | -1.1 | |||
3,215,615 | + | -1.8 | |||
3,215,615 | + | +0.1 | |||
3,215,623 | - | +0.3 | |||
3,215,623 | - | -1.0 | |||
3,215,707 | + | Dshi_3047 | 0.15 | -2.0 | |
3,215,707 | + | Dshi_3047 | 0.15 | +0.6 | |
3,215,715 | - | Dshi_3047 | 0.16 | -1.1 | |
3,215,981 | - | Dshi_3047 | 0.46 | -0.1 | |
3,215,988 | - | Dshi_3047 | 0.47 | -1.5 | |
3,216,020 | + | Dshi_3047 | 0.50 | -0.3 | |
3,216,181 | + | Dshi_3047 | 0.69 | -3.2 | |
3,216,311 | + | Dshi_3047 | 0.83 | -0.2 | |
3,216,366 | + | Dshi_3047 | 0.89 | +0.1 | |
3,216,428 | + | +0.0 | |||
3,216,727 | + | Dshi_3048 | 0.19 | +0.1 | |
3,216,745 | + | Dshi_3048 | 0.21 | -0.5 | |
3,216,946 | + | Dshi_3048 | 0.47 | -1.4 | |
3,216,954 | - | Dshi_3048 | 0.48 | -0.1 | |
3,216,973 | - | Dshi_3048 | 0.50 | -0.1 | |
3,217,076 | - | Dshi_3048 | 0.63 | -0.8 | |
3,217,242 | - | Dshi_3048 | 0.85 | -0.1 | |
3,217,270 | + | Dshi_3048 | 0.88 | -0.4 |
Or see this region's nucleotide sequence