Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3045
Experiment: m.b. Bacitracin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Bacitracin 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,212,446 | - | Dshi_3044 | 0.44 | +0.0 | |
3,212,471 | - | Dshi_3044 | 0.46 | -0.8 | |
3,212,653 | + | Dshi_3044 | 0.58 | -0.4 | |
3,212,677 | - | Dshi_3044 | 0.60 | -0.6 | |
3,212,707 | - | Dshi_3044 | 0.62 | +0.1 | |
3,212,733 | - | Dshi_3044 | 0.64 | -0.3 | |
3,212,751 | + | Dshi_3044 | 0.65 | +0.3 | |
3,212,872 | - | Dshi_3044 | 0.74 | -0.2 | |
3,212,949 | + | Dshi_3044 | 0.79 | -0.0 | |
3,213,156 | + | -0.9 | |||
3,213,164 | - | +0.2 | |||
3,213,166 | + | -1.0 | |||
3,213,168 | - | -0.4 | |||
3,213,296 | + | -0.9 | |||
3,213,302 | - | +0.3 | |||
3,213,302 | - | -0.7 | |||
3,213,302 | - | -1.8 | |||
3,213,334 | - | -1.9 | |||
3,213,455 | + | Dshi_3045 | 0.14 | -0.6 | |
3,213,456 | + | Dshi_3045 | 0.14 | +0.0 | |
3,213,505 | + | Dshi_3045 | 0.19 | -0.1 | |
3,213,545 | - | Dshi_3045 | 0.23 | -1.3 | |
3,213,571 | - | Dshi_3045 | 0.26 | -2.4 | |
3,213,911 | + | Dshi_3045 | 0.59 | -1.3 | |
3,213,911 | + | Dshi_3045 | 0.59 | -1.8 | |
3,214,076 | - | Dshi_3045 | 0.75 | -1.4 | |
3,214,087 | - | Dshi_3045 | 0.76 | -2.3 | |
3,214,186 | + | Dshi_3045 | 0.86 | -2.8 | |
3,214,347 | - | +0.2 | |||
3,214,347 | - | -1.4 | |||
3,214,450 | - | +0.3 | |||
3,214,559 | - | Dshi_3046 | 0.18 | -1.7 | |
3,214,892 | + | Dshi_3046 | 0.45 | +0.5 | |
3,215,072 | - | Dshi_3046 | 0.59 | -1.2 |
Or see this region's nucleotide sequence