Experiment: m.b. Bacitracin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3038 and Dshi_3039 are separated by 3 nucleotides Dshi_3039 and Dshi_3040 are separated by 118 nucleotides Dshi_3040 and Dshi_3041 are separated by 118 nucleotides Dshi_3041 and Dshi_3042 are separated by 3 nucleotides
Dshi_3038: Dshi_3038 - transcriptional regulator, TetR family (RefSeq), at 3,207,941 to 3,208,633
_3038
Dshi_3039: Dshi_3039 - BLUF domain protein (RefSeq), at 3,208,637 to 3,209,044
_3039
Dshi_3040: Dshi_3040 - Dihydrodipicolinate reductase (RefSeq), at 3,209,163 to 3,209,972
_3040
Dshi_3041: Dshi_3041 - ribosome-binding factor A (RefSeq), at 3,210,091 to 3,210,498
_3041
Dshi_3042: Dshi_3042 - tRNA pseudouridine synthase B (RefSeq), at 3,210,502 to 3,211,416
_3042
Position (kb)
3209
3210 Strain fitness (log2 ratio)
-2
-1
0
1 at 3208.167 kb on - strand, within Dshi_3038 at 3208.198 kb on + strand, within Dshi_3038 at 3208.206 kb on - strand, within Dshi_3038 at 3208.227 kb on + strand, within Dshi_3038 at 3208.271 kb on - strand, within Dshi_3038 at 3208.401 kb on + strand, within Dshi_3038 at 3208.433 kb on + strand, within Dshi_3038 at 3208.443 kb on + strand, within Dshi_3038 at 3208.456 kb on - strand, within Dshi_3038 at 3208.526 kb on - strand, within Dshi_3038 at 3208.627 kb on + strand at 3208.833 kb on - strand, within Dshi_3039 at 3208.905 kb on - strand, within Dshi_3039 at 3208.946 kb on - strand, within Dshi_3039 at 3208.980 kb on + strand, within Dshi_3039 at 3209.035 kb on - strand at 3209.103 kb on - strand at 3209.990 kb on - strand at 3210.090 kb on - strand at 3210.251 kb on + strand, within Dshi_3041 at 3210.275 kb on + strand, within Dshi_3041 at 3210.375 kb on - strand, within Dshi_3041 at 3210.492 kb on + strand at 3210.499 kb on + strand at 3210.537 kb on - strand at 3210.580 kb on + strand at 3210.599 kb on - strand, within Dshi_3042 at 3210.766 kb on - strand, within Dshi_3042 at 3210.873 kb on + strand, within Dshi_3042
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml remove 3,208,167 - Dshi_3038 0.33 -2.5 3,208,198 + Dshi_3038 0.37 -2.6 3,208,206 - Dshi_3038 0.38 -1.7 3,208,227 + Dshi_3038 0.41 -1.5 3,208,271 - Dshi_3038 0.48 -2.2 3,208,401 + Dshi_3038 0.66 -1.5 3,208,433 + Dshi_3038 0.71 -0.3 3,208,443 + Dshi_3038 0.72 -2.1 3,208,456 - Dshi_3038 0.74 -0.8 3,208,526 - Dshi_3038 0.84 -0.3 3,208,627 + -0.3 3,208,833 - Dshi_3039 0.48 -0.4 3,208,905 - Dshi_3039 0.66 +0.2 3,208,946 - Dshi_3039 0.76 -0.1 3,208,980 + Dshi_3039 0.84 -0.7 3,209,035 - -0.2 3,209,103 - -0.1 3,209,990 - -2.6 3,210,090 - -0.2 3,210,251 + Dshi_3041 0.39 +1.6 3,210,275 + Dshi_3041 0.45 +1.4 3,210,375 - Dshi_3041 0.70 +0.9 3,210,492 + +0.4 3,210,499 + -0.4 3,210,537 - -0.3 3,210,580 + -0.6 3,210,599 - Dshi_3042 0.11 -1.1 3,210,766 - Dshi_3042 0.29 -0.3 3,210,873 + Dshi_3042 0.41 -0.8
Or see this region's nucleotide sequence