Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2961

Experiment: m.b. Bacitracin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2959 and Dshi_2960 overlap by 4 nucleotidesDshi_2960 and Dshi_2961 overlap by 4 nucleotidesDshi_2961 and Dshi_2962 are separated by 222 nucleotides Dshi_2959: Dshi_2959 - Xanthine dehydrogenase (EC 1.17.1.4) (from data), at 3,123,160 to 3,125,505 _2959 Dshi_2960: Dshi_2960 - Xanthine dehydrogenase accessory protein XdhC (RefSeq), at 3,125,502 to 3,126,464 _2960 Dshi_2961: Dshi_2961 - ABC transporter related (RefSeq), at 3,126,461 to 3,127,996 _2961 Dshi_2962: Dshi_2962 - inner-membrane translocator (RefSeq), at 3,128,219 to 3,129,304 _2962 Position (kb) 3126 3127 3128Strain fitness (log2 ratio) -2 -1 0 1at 3125.750 kb on - strand, within Dshi_2960at 3125.766 kb on + strand, within Dshi_2960at 3125.813 kb on + strand, within Dshi_2960at 3125.965 kb on + strand, within Dshi_2960at 3125.997 kb on + strand, within Dshi_2960at 3126.056 kb on + strand, within Dshi_2960at 3126.057 kb on + strand, within Dshi_2960at 3126.172 kb on + strand, within Dshi_2960at 3126.239 kb on + strand, within Dshi_2960at 3126.373 kb on + strandat 3126.434 kb on + strandat 3126.490 kb on + strandat 3126.504 kb on - strandat 3126.548 kb on + strandat 3126.562 kb on - strandat 3126.606 kb on - strandat 3126.710 kb on - strand, within Dshi_2961at 3126.711 kb on - strand, within Dshi_2961at 3126.826 kb on + strand, within Dshi_2961at 3126.834 kb on - strand, within Dshi_2961at 3126.951 kb on + strand, within Dshi_2961at 3127.278 kb on + strand, within Dshi_2961at 3127.286 kb on - strand, within Dshi_2961at 3127.331 kb on + strand, within Dshi_2961at 3127.437 kb on + strand, within Dshi_2961at 3127.643 kb on - strand, within Dshi_2961at 3127.691 kb on + strand, within Dshi_2961at 3127.699 kb on - strand, within Dshi_2961at 3127.723 kb on + strand, within Dshi_2961at 3127.737 kb on - strand, within Dshi_2961at 3127.805 kb on - strand, within Dshi_2961at 3127.879 kb on + strandat 3128.198 kb on - strandat 3128.254 kb on + strandat 3128.254 kb on + strandat 3128.272 kb on - strandat 3128.317 kb on - strandat 3128.419 kb on + strand, within Dshi_2962at 3128.427 kb on - strand, within Dshi_2962at 3128.504 kb on - strand, within Dshi_2962at 3128.614 kb on + strand, within Dshi_2962at 3128.636 kb on + strand, within Dshi_2962at 3128.694 kb on - strand, within Dshi_2962at 3128.728 kb on - strand, within Dshi_2962at 3128.739 kb on + strand, within Dshi_2962at 3128.747 kb on - strand, within Dshi_2962at 3128.747 kb on - strand, within Dshi_2962at 3128.747 kb on - strand, within Dshi_2962at 3128.772 kb on + strand, within Dshi_2962at 3128.780 kb on - strand, within Dshi_2962at 3128.799 kb on + strand, within Dshi_2962at 3128.799 kb on + strand, within Dshi_2962at 3128.807 kb on - strand, within Dshi_2962at 3128.807 kb on - strand, within Dshi_2962at 3128.813 kb on + strand, within Dshi_2962at 3128.822 kb on + strand, within Dshi_2962at 3128.891 kb on + strand, within Dshi_2962

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml
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3,125,750 - Dshi_2960 0.26 -0.3
3,125,766 + Dshi_2960 0.27 +0.2
3,125,813 + Dshi_2960 0.32 +0.5
3,125,965 + Dshi_2960 0.48 +0.3
3,125,997 + Dshi_2960 0.51 +1.5
3,126,056 + Dshi_2960 0.58 -0.7
3,126,057 + Dshi_2960 0.58 -1.0
3,126,172 + Dshi_2960 0.70 +0.9
3,126,239 + Dshi_2960 0.77 +0.6
3,126,373 + -0.3
3,126,434 + +0.3
3,126,490 + +1.3
3,126,504 - +0.1
3,126,548 + -1.0
3,126,562 - -1.5
3,126,606 - +0.7
3,126,710 - Dshi_2961 0.16 +0.1
3,126,711 - Dshi_2961 0.16 -0.0
3,126,826 + Dshi_2961 0.24 +0.5
3,126,834 - Dshi_2961 0.24 -0.2
3,126,951 + Dshi_2961 0.32 +0.3
3,127,278 + Dshi_2961 0.53 +0.6
3,127,286 - Dshi_2961 0.54 -0.9
3,127,331 + Dshi_2961 0.57 -0.5
3,127,437 + Dshi_2961 0.64 -1.3
3,127,643 - Dshi_2961 0.77 +0.1
3,127,691 + Dshi_2961 0.80 -0.8
3,127,699 - Dshi_2961 0.81 -0.9
3,127,723 + Dshi_2961 0.82 +0.0
3,127,737 - Dshi_2961 0.83 -0.0
3,127,805 - Dshi_2961 0.88 -0.5
3,127,879 + +1.1
3,128,198 - -1.3
3,128,254 + -0.0
3,128,254 + -0.7
3,128,272 - -0.3
3,128,317 - -2.7
3,128,419 + Dshi_2962 0.18 -0.0
3,128,427 - Dshi_2962 0.19 -0.1
3,128,504 - Dshi_2962 0.26 +0.4
3,128,614 + Dshi_2962 0.36 -0.1
3,128,636 + Dshi_2962 0.38 +0.2
3,128,694 - Dshi_2962 0.44 +0.1
3,128,728 - Dshi_2962 0.47 -0.3
3,128,739 + Dshi_2962 0.48 -0.5
3,128,747 - Dshi_2962 0.49 +0.6
3,128,747 - Dshi_2962 0.49 +0.8
3,128,747 - Dshi_2962 0.49 -0.6
3,128,772 + Dshi_2962 0.51 +1.4
3,128,780 - Dshi_2962 0.52 -0.4
3,128,799 + Dshi_2962 0.53 +0.6
3,128,799 + Dshi_2962 0.53 +0.2
3,128,807 - Dshi_2962 0.54 -0.9
3,128,807 - Dshi_2962 0.54 -0.2
3,128,813 + Dshi_2962 0.55 +0.3
3,128,822 + Dshi_2962 0.56 +0.5
3,128,891 + Dshi_2962 0.62 +0.8

Or see this region's nucleotide sequence