Experiment: m.b. Bacitracin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2959 and Dshi_2960 overlap by 4 nucleotides Dshi_2960 and Dshi_2961 overlap by 4 nucleotides Dshi_2961 and Dshi_2962 are separated by 222 nucleotides
Dshi_2959: Dshi_2959 - Xanthine dehydrogenase (EC 1.17.1.4) (from data) , at 3,123,160 to 3,125,505
_2959
Dshi_2960: Dshi_2960 - Xanthine dehydrogenase accessory protein XdhC (RefSeq), at 3,125,502 to 3,126,464
_2960
Dshi_2961: Dshi_2961 - ABC transporter related (RefSeq), at 3,126,461 to 3,127,996
_2961
Dshi_2962: Dshi_2962 - inner-membrane translocator (RefSeq), at 3,128,219 to 3,129,304
_2962
Position (kb)
3126
3127
3128 Strain fitness (log2 ratio)
-2
-1
0
1 at 3125.750 kb on - strand, within Dshi_2960 at 3125.766 kb on + strand, within Dshi_2960 at 3125.813 kb on + strand, within Dshi_2960 at 3125.965 kb on + strand, within Dshi_2960 at 3125.997 kb on + strand, within Dshi_2960 at 3126.056 kb on + strand, within Dshi_2960 at 3126.057 kb on + strand, within Dshi_2960 at 3126.172 kb on + strand, within Dshi_2960 at 3126.239 kb on + strand, within Dshi_2960 at 3126.373 kb on + strand at 3126.434 kb on + strand at 3126.490 kb on + strand at 3126.504 kb on - strand at 3126.548 kb on + strand at 3126.562 kb on - strand at 3126.606 kb on - strand at 3126.710 kb on - strand, within Dshi_2961 at 3126.711 kb on - strand, within Dshi_2961 at 3126.826 kb on + strand, within Dshi_2961 at 3126.834 kb on - strand, within Dshi_2961 at 3126.951 kb on + strand, within Dshi_2961 at 3127.278 kb on + strand, within Dshi_2961 at 3127.286 kb on - strand, within Dshi_2961 at 3127.331 kb on + strand, within Dshi_2961 at 3127.437 kb on + strand, within Dshi_2961 at 3127.643 kb on - strand, within Dshi_2961 at 3127.691 kb on + strand, within Dshi_2961 at 3127.699 kb on - strand, within Dshi_2961 at 3127.723 kb on + strand, within Dshi_2961 at 3127.737 kb on - strand, within Dshi_2961 at 3127.805 kb on - strand, within Dshi_2961 at 3127.879 kb on + strand at 3128.198 kb on - strand at 3128.254 kb on + strand at 3128.254 kb on + strand at 3128.272 kb on - strand at 3128.317 kb on - strand at 3128.419 kb on + strand, within Dshi_2962 at 3128.427 kb on - strand, within Dshi_2962 at 3128.504 kb on - strand, within Dshi_2962 at 3128.614 kb on + strand, within Dshi_2962 at 3128.636 kb on + strand, within Dshi_2962 at 3128.694 kb on - strand, within Dshi_2962 at 3128.728 kb on - strand, within Dshi_2962 at 3128.739 kb on + strand, within Dshi_2962 at 3128.747 kb on - strand, within Dshi_2962 at 3128.747 kb on - strand, within Dshi_2962 at 3128.747 kb on - strand, within Dshi_2962 at 3128.772 kb on + strand, within Dshi_2962 at 3128.780 kb on - strand, within Dshi_2962 at 3128.799 kb on + strand, within Dshi_2962 at 3128.799 kb on + strand, within Dshi_2962 at 3128.807 kb on - strand, within Dshi_2962 at 3128.807 kb on - strand, within Dshi_2962 at 3128.813 kb on + strand, within Dshi_2962 at 3128.822 kb on + strand, within Dshi_2962 at 3128.891 kb on + strand, within Dshi_2962
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml remove 3,125,750 - Dshi_2960 0.26 -0.3 3,125,766 + Dshi_2960 0.27 +0.2 3,125,813 + Dshi_2960 0.32 +0.5 3,125,965 + Dshi_2960 0.48 +0.3 3,125,997 + Dshi_2960 0.51 +1.5 3,126,056 + Dshi_2960 0.58 -0.7 3,126,057 + Dshi_2960 0.58 -1.0 3,126,172 + Dshi_2960 0.70 +0.9 3,126,239 + Dshi_2960 0.77 +0.6 3,126,373 + -0.3 3,126,434 + +0.3 3,126,490 + +1.3 3,126,504 - +0.1 3,126,548 + -1.0 3,126,562 - -1.5 3,126,606 - +0.7 3,126,710 - Dshi_2961 0.16 +0.1 3,126,711 - Dshi_2961 0.16 -0.0 3,126,826 + Dshi_2961 0.24 +0.5 3,126,834 - Dshi_2961 0.24 -0.2 3,126,951 + Dshi_2961 0.32 +0.3 3,127,278 + Dshi_2961 0.53 +0.6 3,127,286 - Dshi_2961 0.54 -0.9 3,127,331 + Dshi_2961 0.57 -0.5 3,127,437 + Dshi_2961 0.64 -1.3 3,127,643 - Dshi_2961 0.77 +0.1 3,127,691 + Dshi_2961 0.80 -0.8 3,127,699 - Dshi_2961 0.81 -0.9 3,127,723 + Dshi_2961 0.82 +0.0 3,127,737 - Dshi_2961 0.83 -0.0 3,127,805 - Dshi_2961 0.88 -0.5 3,127,879 + +1.1 3,128,198 - -1.3 3,128,254 + -0.0 3,128,254 + -0.7 3,128,272 - -0.3 3,128,317 - -2.7 3,128,419 + Dshi_2962 0.18 -0.0 3,128,427 - Dshi_2962 0.19 -0.1 3,128,504 - Dshi_2962 0.26 +0.4 3,128,614 + Dshi_2962 0.36 -0.1 3,128,636 + Dshi_2962 0.38 +0.2 3,128,694 - Dshi_2962 0.44 +0.1 3,128,728 - Dshi_2962 0.47 -0.3 3,128,739 + Dshi_2962 0.48 -0.5 3,128,747 - Dshi_2962 0.49 +0.6 3,128,747 - Dshi_2962 0.49 +0.8 3,128,747 - Dshi_2962 0.49 -0.6 3,128,772 + Dshi_2962 0.51 +1.4 3,128,780 - Dshi_2962 0.52 -0.4 3,128,799 + Dshi_2962 0.53 +0.6 3,128,799 + Dshi_2962 0.53 +0.2 3,128,807 - Dshi_2962 0.54 -0.9 3,128,807 - Dshi_2962 0.54 -0.2 3,128,813 + Dshi_2962 0.55 +0.3 3,128,822 + Dshi_2962 0.56 +0.5 3,128,891 + Dshi_2962 0.62 +0.8
Or see this region's nucleotide sequence