Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2800

Experiment: m.b. Bacitracin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2799 and Dshi_2800 are separated by 33 nucleotidesDshi_2800 and Dshi_2801 are separated by 4 nucleotides Dshi_2799: Dshi_2799 - Flavocytochrome c sulphide dehydrogenase flavin-binding (RefSeq), at 2,957,464 to 2,958,732 _2799 Dshi_2800: Dshi_2800 - cytochrome c class I (RefSeq), at 2,958,766 to 2,959,473 _2800 Dshi_2801: Dshi_2801 - cytochrome c class I (RefSeq), at 2,959,478 to 2,960,506 _2801 Position (kb) 2958 2959 2960Strain fitness (log2 ratio) -2 -1 0 1 2at 2958.028 kb on + strand, within Dshi_2799at 2958.046 kb on - strand, within Dshi_2799at 2958.046 kb on - strand, within Dshi_2799at 2958.178 kb on - strand, within Dshi_2799at 2958.215 kb on + strand, within Dshi_2799at 2958.418 kb on + strand, within Dshi_2799at 2958.437 kb on - strand, within Dshi_2799at 2958.468 kb on + strand, within Dshi_2799at 2958.474 kb on + strand, within Dshi_2799at 2958.486 kb on + strand, within Dshi_2799at 2958.500 kb on + strand, within Dshi_2799at 2958.646 kb on + strandat 2958.669 kb on + strandat 2958.751 kb on + strandat 2958.814 kb on + strandat 2958.920 kb on + strand, within Dshi_2800at 2958.933 kb on - strand, within Dshi_2800at 2958.953 kb on + strand, within Dshi_2800at 2958.972 kb on + strand, within Dshi_2800at 2959.118 kb on - strand, within Dshi_2800at 2959.168 kb on - strand, within Dshi_2800at 2959.266 kb on + strand, within Dshi_2800at 2959.266 kb on + strand, within Dshi_2800at 2959.305 kb on + strand, within Dshi_2800at 2959.313 kb on - strand, within Dshi_2800at 2959.450 kb on - strandat 2959.525 kb on - strandat 2959.575 kb on + strandat 2959.653 kb on - strand, within Dshi_2801at 2959.808 kb on - strand, within Dshi_2801at 2959.923 kb on - strand, within Dshi_2801at 2959.949 kb on - strand, within Dshi_2801at 2960.096 kb on - strand, within Dshi_2801at 2960.123 kb on + strand, within Dshi_2801at 2960.278 kb on + strand, within Dshi_2801at 2960.333 kb on + strand, within Dshi_2801at 2960.412 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml
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2,958,028 + Dshi_2799 0.44 +0.9
2,958,046 - Dshi_2799 0.46 +0.3
2,958,046 - Dshi_2799 0.46 +0.1
2,958,178 - Dshi_2799 0.56 +0.5
2,958,215 + Dshi_2799 0.59 +0.3
2,958,418 + Dshi_2799 0.75 -1.7
2,958,437 - Dshi_2799 0.77 -0.1
2,958,468 + Dshi_2799 0.79 -0.6
2,958,474 + Dshi_2799 0.80 -0.3
2,958,486 + Dshi_2799 0.81 -0.3
2,958,500 + Dshi_2799 0.82 -1.2
2,958,646 + -0.1
2,958,669 + -0.0
2,958,751 + +0.6
2,958,814 + -0.1
2,958,920 + Dshi_2800 0.22 +0.4
2,958,933 - Dshi_2800 0.24 +0.4
2,958,953 + Dshi_2800 0.26 +1.3
2,958,972 + Dshi_2800 0.29 +0.4
2,959,118 - Dshi_2800 0.50 -0.3
2,959,168 - Dshi_2800 0.57 -0.6
2,959,266 + Dshi_2800 0.71 +0.5
2,959,266 + Dshi_2800 0.71 -2.4
2,959,305 + Dshi_2800 0.76 +1.9
2,959,313 - Dshi_2800 0.77 +0.0
2,959,450 - -0.7
2,959,525 - -0.7
2,959,575 + -0.7
2,959,653 - Dshi_2801 0.17 +0.3
2,959,808 - Dshi_2801 0.32 +0.9
2,959,923 - Dshi_2801 0.43 +0.4
2,959,949 - Dshi_2801 0.46 -0.2
2,960,096 - Dshi_2801 0.60 -1.4
2,960,123 + Dshi_2801 0.63 +0.4
2,960,278 + Dshi_2801 0.78 -1.5
2,960,333 + Dshi_2801 0.83 +0.3
2,960,412 - -0.3

Or see this region's nucleotide sequence