Experiment: m.b. Bacitracin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2233 and Dshi_2234 are separated by 103 nucleotides Dshi_2234 and Dshi_2235 are separated by 91 nucleotides
Dshi_2233: Dshi_2233 - poly(R)-hydroxyalkanoic acid synthase, class I (RefSeq), at 2,355,488 to 2,357,302
_2233
Dshi_2234: Dshi_2234 - polyhydroxyalkanoate depolymerase, intracellular (RefSeq), at 2,357,406 to 2,358,683
_2234
Dshi_2235: Dshi_2235 - Methionine synthase vitamin-B12 independent (RefSeq), at 2,358,775 to 2,359,911
_2235
Position (kb)
2357
2358
2359 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2356.614 kb on - strand, within Dshi_2233 at 2356.996 kb on + strand, within Dshi_2233 at 2357.057 kb on - strand, within Dshi_2233 at 2357.115 kb on - strand, within Dshi_2233 at 2357.298 kb on - strand at 2357.331 kb on + strand at 2357.336 kb on + strand at 2357.340 kb on + strand at 2357.385 kb on + strand at 2357.393 kb on - strand at 2357.414 kb on + strand at 2357.423 kb on - strand at 2357.436 kb on - strand at 2357.461 kb on + strand at 2357.487 kb on + strand at 2357.647 kb on - strand, within Dshi_2234 at 2357.768 kb on + strand, within Dshi_2234 at 2357.785 kb on + strand, within Dshi_2234 at 2357.840 kb on - strand, within Dshi_2234 at 2357.878 kb on - strand, within Dshi_2234 at 2358.074 kb on - strand, within Dshi_2234 at 2358.077 kb on + strand, within Dshi_2234 at 2358.094 kb on + strand, within Dshi_2234 at 2358.099 kb on + strand, within Dshi_2234 at 2358.157 kb on + strand, within Dshi_2234 at 2358.165 kb on - strand, within Dshi_2234 at 2358.209 kb on + strand, within Dshi_2234 at 2358.316 kb on - strand, within Dshi_2234 at 2358.374 kb on + strand, within Dshi_2234 at 2358.386 kb on + strand, within Dshi_2234 at 2358.394 kb on + strand, within Dshi_2234 at 2358.416 kb on + strand, within Dshi_2234 at 2358.416 kb on + strand, within Dshi_2234 at 2358.432 kb on - strand, within Dshi_2234 at 2358.497 kb on + strand, within Dshi_2234 at 2358.497 kb on + strand, within Dshi_2234 at 2358.505 kb on - strand, within Dshi_2234 at 2358.690 kb on - strand at 2358.786 kb on + strand at 2358.786 kb on - strand at 2358.804 kb on + strand at 2358.935 kb on + strand, within Dshi_2235 at 2359.071 kb on + strand, within Dshi_2235 at 2359.106 kb on + strand, within Dshi_2235 at 2359.120 kb on + strand, within Dshi_2235 at 2359.127 kb on + strand, within Dshi_2235 at 2359.210 kb on - strand, within Dshi_2235 at 2359.220 kb on - strand, within Dshi_2235 at 2359.225 kb on + strand, within Dshi_2235 at 2359.233 kb on - strand, within Dshi_2235 at 2359.233 kb on - strand, within Dshi_2235 at 2359.247 kb on - strand, within Dshi_2235 at 2359.446 kb on + strand, within Dshi_2235 at 2359.573 kb on - strand, within Dshi_2235 at 2359.609 kb on - strand, within Dshi_2235
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml remove 2,356,614 - Dshi_2233 0.62 -1.9 2,356,996 + Dshi_2233 0.83 -1.4 2,357,057 - Dshi_2233 0.86 +0.5 2,357,115 - Dshi_2233 0.90 +0.7 2,357,298 - -0.3 2,357,331 + -0.0 2,357,336 + -2.9 2,357,340 + -1.1 2,357,385 + -0.2 2,357,393 - -0.3 2,357,414 + +1.2 2,357,423 - -0.2 2,357,436 - -0.1 2,357,461 + -0.6 2,357,487 + +0.6 2,357,647 - Dshi_2234 0.19 -0.3 2,357,768 + Dshi_2234 0.28 -0.7 2,357,785 + Dshi_2234 0.30 +0.2 2,357,840 - Dshi_2234 0.34 -0.1 2,357,878 - Dshi_2234 0.37 -0.4 2,358,074 - Dshi_2234 0.52 +0.6 2,358,077 + Dshi_2234 0.53 +0.0 2,358,094 + Dshi_2234 0.54 +0.2 2,358,099 + Dshi_2234 0.54 -0.4 2,358,157 + Dshi_2234 0.59 +0.0 2,358,165 - Dshi_2234 0.59 -0.8 2,358,209 + Dshi_2234 0.63 +3.2 2,358,316 - Dshi_2234 0.71 +0.5 2,358,374 + Dshi_2234 0.76 +0.0 2,358,386 + Dshi_2234 0.77 +0.8 2,358,394 + Dshi_2234 0.77 -0.6 2,358,416 + Dshi_2234 0.79 -0.1 2,358,416 + Dshi_2234 0.79 +1.2 2,358,432 - Dshi_2234 0.80 +1.5 2,358,497 + Dshi_2234 0.85 +0.3 2,358,497 + Dshi_2234 0.85 -0.5 2,358,505 - Dshi_2234 0.86 +0.2 2,358,690 - +0.1 2,358,786 + -0.4 2,358,786 - +0.3 2,358,804 + +0.4 2,358,935 + Dshi_2235 0.14 -0.1 2,359,071 + Dshi_2235 0.26 -0.6 2,359,106 + Dshi_2235 0.29 -0.2 2,359,120 + Dshi_2235 0.30 +0.0 2,359,127 + Dshi_2235 0.31 +0.2 2,359,210 - Dshi_2235 0.38 +0.1 2,359,220 - Dshi_2235 0.39 +0.1 2,359,225 + Dshi_2235 0.40 -0.5 2,359,233 - Dshi_2235 0.40 +0.2 2,359,233 - Dshi_2235 0.40 -0.6 2,359,247 - Dshi_2235 0.42 +0.5 2,359,446 + Dshi_2235 0.59 -2.1 2,359,573 - Dshi_2235 0.70 -0.6 2,359,609 - Dshi_2235 0.73 -1.1
Or see this region's nucleotide sequence