Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2031

Experiment: m.b. Bacitracin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2029 and Dshi_2030 are separated by 160 nucleotidesDshi_2030 and Dshi_2031 are separated by 11 nucleotidesDshi_2031 and Dshi_2032 are separated by 117 nucleotidesDshi_2032 and Dshi_2033 are separated by 12 nucleotides Dshi_2029: Dshi_2029 - transcriptional regulator, LacI family (RefSeq), at 2,149,164 to 2,150,222 _2029 Dshi_2030: Dshi_2030 - hypothetical protein (RefSeq), at 2,150,383 to 2,150,574 _2030 Dshi_2031: Dshi_2031 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 2,150,586 to 2,151,734 _2031 Dshi_2032: Dshi_2032 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 2,151,852 to 2,152,367 _2032 Dshi_2033: Dshi_2033 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 2,152,380 to 2,153,708 _2033 Position (kb) 2150 2151 2152Strain fitness (log2 ratio) -3 -2 -1 0 1at 2149.619 kb on - strand, within Dshi_2029at 2149.702 kb on - strand, within Dshi_2029at 2149.729 kb on + strand, within Dshi_2029at 2149.743 kb on - strand, within Dshi_2029at 2149.754 kb on - strand, within Dshi_2029at 2149.785 kb on - strand, within Dshi_2029at 2149.820 kb on + strand, within Dshi_2029at 2149.873 kb on - strand, within Dshi_2029at 2150.063 kb on + strand, within Dshi_2029at 2150.176 kb on - strandat 2150.183 kb on - strandat 2150.200 kb on - strandat 2150.276 kb on + strandat 2150.433 kb on + strand, within Dshi_2030at 2150.479 kb on - strand, within Dshi_2030at 2150.526 kb on + strand, within Dshi_2030at 2150.701 kb on - strand, within Dshi_2031at 2150.701 kb on - strand, within Dshi_2031at 2150.764 kb on + strand, within Dshi_2031at 2150.779 kb on + strand, within Dshi_2031at 2150.790 kb on - strand, within Dshi_2031at 2150.799 kb on + strand, within Dshi_2031at 2150.910 kb on + strand, within Dshi_2031at 2150.925 kb on + strand, within Dshi_2031at 2150.925 kb on + strand, within Dshi_2031at 2150.989 kb on + strand, within Dshi_2031at 2151.069 kb on + strand, within Dshi_2031at 2151.151 kb on + strand, within Dshi_2031at 2151.253 kb on + strand, within Dshi_2031at 2151.313 kb on - strand, within Dshi_2031at 2151.432 kb on - strand, within Dshi_2031at 2151.442 kb on - strand, within Dshi_2031at 2151.446 kb on + strand, within Dshi_2031at 2151.538 kb on + strand, within Dshi_2031at 2151.538 kb on + strand, within Dshi_2031at 2151.538 kb on + strand, within Dshi_2031at 2151.538 kb on + strand, within Dshi_2031at 2151.582 kb on - strand, within Dshi_2031at 2151.649 kb on - strandat 2151.666 kb on + strandat 2151.787 kb on - strandat 2151.807 kb on - strandat 2151.807 kb on - strandat 2151.807 kb on - strandat 2151.810 kb on + strandat 2151.838 kb on - strandat 2151.998 kb on - strand, within Dshi_2032at 2152.010 kb on + strand, within Dshi_2032at 2152.136 kb on - strand, within Dshi_2032at 2152.182 kb on + strand, within Dshi_2032at 2152.208 kb on + strand, within Dshi_2032at 2152.272 kb on + strand, within Dshi_2032at 2152.366 kb on - strandat 2152.382 kb on + strandat 2152.532 kb on + strand, within Dshi_2033at 2152.533 kb on + strand, within Dshi_2033at 2152.533 kb on + strand, within Dshi_2033at 2152.541 kb on - strand, within Dshi_2033at 2152.710 kb on + strand, within Dshi_2033

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml
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2,149,619 - Dshi_2029 0.43 -1.7
2,149,702 - Dshi_2029 0.51 -1.5
2,149,729 + Dshi_2029 0.53 -1.6
2,149,743 - Dshi_2029 0.55 -1.2
2,149,754 - Dshi_2029 0.56 -3.0
2,149,785 - Dshi_2029 0.59 -1.5
2,149,820 + Dshi_2029 0.62 -1.9
2,149,873 - Dshi_2029 0.67 -0.9
2,150,063 + Dshi_2029 0.85 -1.4
2,150,176 - -0.1
2,150,183 - -0.2
2,150,200 - -0.3
2,150,276 + +0.2
2,150,433 + Dshi_2030 0.26 -1.6
2,150,479 - Dshi_2030 0.50 +0.8
2,150,526 + Dshi_2030 0.74 -2.7
2,150,701 - Dshi_2031 0.10 -3.3
2,150,701 - Dshi_2031 0.10 -0.1
2,150,764 + Dshi_2031 0.15 -0.2
2,150,779 + Dshi_2031 0.17 -0.5
2,150,790 - Dshi_2031 0.18 +0.0
2,150,799 + Dshi_2031 0.19 -0.7
2,150,910 + Dshi_2031 0.28 -0.4
2,150,925 + Dshi_2031 0.30 +0.0
2,150,925 + Dshi_2031 0.30 +0.1
2,150,989 + Dshi_2031 0.35 -0.1
2,151,069 + Dshi_2031 0.42 +0.2
2,151,151 + Dshi_2031 0.49 +1.6
2,151,253 + Dshi_2031 0.58 +0.2
2,151,313 - Dshi_2031 0.63 -0.8
2,151,432 - Dshi_2031 0.74 -0.6
2,151,442 - Dshi_2031 0.74 -1.3
2,151,446 + Dshi_2031 0.75 +0.2
2,151,538 + Dshi_2031 0.83 +1.2
2,151,538 + Dshi_2031 0.83 -0.2
2,151,538 + Dshi_2031 0.83 -1.2
2,151,538 + Dshi_2031 0.83 -0.1
2,151,582 - Dshi_2031 0.87 +0.1
2,151,649 - +0.3
2,151,666 + -0.3
2,151,787 - -0.3
2,151,807 - +0.2
2,151,807 - -0.4
2,151,807 - +0.0
2,151,810 + -0.5
2,151,838 - -0.0
2,151,998 - Dshi_2032 0.28 -0.8
2,152,010 + Dshi_2032 0.31 -0.3
2,152,136 - Dshi_2032 0.55 -0.5
2,152,182 + Dshi_2032 0.64 -0.1
2,152,208 + Dshi_2032 0.69 -0.2
2,152,272 + Dshi_2032 0.81 +0.7
2,152,366 - -0.5
2,152,382 + +0.5
2,152,532 + Dshi_2033 0.11 -1.0
2,152,533 + Dshi_2033 0.12 -0.3
2,152,533 + Dshi_2033 0.12 -0.8
2,152,541 - Dshi_2033 0.12 +0.8
2,152,710 + Dshi_2033 0.25 -0.6

Or see this region's nucleotide sequence