Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1002

Experiment: m.b. Bacitracin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1001 and Dshi_1002 are separated by 132 nucleotidesDshi_1002 and Dshi_1003 are separated by 14 nucleotides Dshi_1001: Dshi_1001 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq), at 1,034,458 to 1,035,408 _1001 Dshi_1002: Dshi_1002 - Cystathionine gamma-synthase (RefSeq), at 1,035,541 to 1,036,683 _1002 Dshi_1003: Dshi_1003 - aminoglycoside phosphotransferase (RefSeq), at 1,036,698 to 1,037,711 _1003 Position (kb) 1035 1036 1037Strain fitness (log2 ratio) -2 -1 0 1at 1034.593 kb on - strand, within Dshi_1001at 1034.635 kb on + strand, within Dshi_1001at 1034.672 kb on + strand, within Dshi_1001at 1034.730 kb on + strand, within Dshi_1001at 1034.737 kb on - strand, within Dshi_1001at 1034.803 kb on + strand, within Dshi_1001at 1034.866 kb on - strand, within Dshi_1001at 1034.866 kb on - strand, within Dshi_1001at 1034.926 kb on - strand, within Dshi_1001at 1035.042 kb on + strand, within Dshi_1001at 1035.075 kb on + strand, within Dshi_1001at 1035.175 kb on + strand, within Dshi_1001at 1035.188 kb on - strand, within Dshi_1001at 1035.379 kb on - strandat 1035.612 kb on + strandat 1035.779 kb on + strand, within Dshi_1002at 1035.779 kb on + strand, within Dshi_1002at 1035.783 kb on - strand, within Dshi_1002at 1035.901 kb on - strand, within Dshi_1002at 1035.958 kb on - strand, within Dshi_1002at 1036.118 kb on - strand, within Dshi_1002at 1036.120 kb on - strand, within Dshi_1002at 1036.131 kb on - strand, within Dshi_1002at 1036.489 kb on + strand, within Dshi_1002at 1036.541 kb on + strand, within Dshi_1002at 1036.871 kb on - strand, within Dshi_1003at 1036.886 kb on - strand, within Dshi_1003at 1036.929 kb on + strand, within Dshi_1003at 1036.944 kb on + strand, within Dshi_1003at 1037.025 kb on + strand, within Dshi_1003at 1037.089 kb on + strand, within Dshi_1003at 1037.208 kb on + strand, within Dshi_1003at 1037.363 kb on - strand, within Dshi_1003at 1037.481 kb on + strand, within Dshi_1003at 1037.530 kb on + strand, within Dshi_1003at 1037.530 kb on + strand, within Dshi_1003at 1037.653 kb on + strandat 1037.679 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml
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1,034,593 - Dshi_1001 0.14 -0.1
1,034,635 + Dshi_1001 0.19 -0.5
1,034,672 + Dshi_1001 0.23 -0.5
1,034,730 + Dshi_1001 0.29 -1.2
1,034,737 - Dshi_1001 0.29 +0.6
1,034,803 + Dshi_1001 0.36 -0.3
1,034,866 - Dshi_1001 0.43 +1.3
1,034,866 - Dshi_1001 0.43 +0.2
1,034,926 - Dshi_1001 0.49 +0.0
1,035,042 + Dshi_1001 0.61 -0.5
1,035,075 + Dshi_1001 0.65 +0.0
1,035,175 + Dshi_1001 0.75 +0.0
1,035,188 - Dshi_1001 0.77 -1.4
1,035,379 - -0.2
1,035,612 + +0.7
1,035,779 + Dshi_1002 0.21 -0.1
1,035,779 + Dshi_1002 0.21 +0.0
1,035,783 - Dshi_1002 0.21 -1.1
1,035,901 - Dshi_1002 0.31 -1.3
1,035,958 - Dshi_1002 0.36 -0.3
1,036,118 - Dshi_1002 0.50 -0.6
1,036,120 - Dshi_1002 0.51 -2.0
1,036,131 - Dshi_1002 0.52 -0.5
1,036,489 + Dshi_1002 0.83 -0.9
1,036,541 + Dshi_1002 0.87 +0.1
1,036,871 - Dshi_1003 0.17 -1.1
1,036,886 - Dshi_1003 0.19 -1.3
1,036,929 + Dshi_1003 0.23 +0.2
1,036,944 + Dshi_1003 0.24 +0.6
1,037,025 + Dshi_1003 0.32 -1.4
1,037,089 + Dshi_1003 0.39 -1.1
1,037,208 + Dshi_1003 0.50 -0.3
1,037,363 - Dshi_1003 0.66 -0.8
1,037,481 + Dshi_1003 0.77 -0.2
1,037,530 + Dshi_1003 0.82 -0.7
1,037,530 + Dshi_1003 0.82 -0.7
1,037,653 + +0.6
1,037,679 + +1.0

Or see this region's nucleotide sequence