Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0515

Experiment: m.b. Bacitracin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0513 and Dshi_0514 overlap by 22 nucleotidesDshi_0514 and Dshi_0515 overlap by 4 nucleotidesDshi_0515 and Dshi_0516 are separated by 6 nucleotides Dshi_0513: Dshi_0513 - transcriptional regulator, LuxR family (RefSeq), at 498,319 to 498,786 _0513 Dshi_0514: Dshi_0514 - response regulator receiver protein (RefSeq), at 498,765 to 498,947 _0514 Dshi_0515: Dshi_0515 - histidine kinase (RefSeq), at 498,944 to 499,843 _0515 Dshi_0516: Dshi_0516 - putative two-component sensor kinase (RefSeq), at 499,850 to 500,836 _0516 Position (kb) 498 499 500Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 498.032 kb on + strandat 498.040 kb on - strandat 498.040 kb on - strandat 498.046 kb on + strandat 498.046 kb on + strandat 498.073 kb on - strandat 498.172 kb on + strandat 498.368 kb on + strand, within Dshi_0513at 498.431 kb on + strand, within Dshi_0513at 498.485 kb on - strand, within Dshi_0513at 498.504 kb on + strand, within Dshi_0513at 498.504 kb on + strand, within Dshi_0513at 498.512 kb on - strand, within Dshi_0513at 498.512 kb on - strand, within Dshi_0513at 498.512 kb on - strand, within Dshi_0513at 498.539 kb on + strand, within Dshi_0513at 498.539 kb on + strand, within Dshi_0513at 498.574 kb on + strand, within Dshi_0513at 498.595 kb on + strand, within Dshi_0513at 498.708 kb on + strand, within Dshi_0513at 498.740 kb on - strandat 498.776 kb on - strandat 498.785 kb on + strandat 498.801 kb on + strand, within Dshi_0514at 498.831 kb on + strand, within Dshi_0514at 498.908 kb on - strand, within Dshi_0514at 498.925 kb on + strand, within Dshi_0514at 499.074 kb on - strand, within Dshi_0515at 499.107 kb on + strand, within Dshi_0515at 499.115 kb on - strand, within Dshi_0515at 499.117 kb on + strand, within Dshi_0515at 499.174 kb on + strand, within Dshi_0515at 499.182 kb on - strand, within Dshi_0515at 499.244 kb on + strand, within Dshi_0515at 499.293 kb on + strand, within Dshi_0515at 499.293 kb on + strand, within Dshi_0515at 499.296 kb on - strand, within Dshi_0515at 499.359 kb on - strand, within Dshi_0515at 499.389 kb on + strand, within Dshi_0515at 499.397 kb on - strand, within Dshi_0515at 499.433 kb on + strand, within Dshi_0515at 499.459 kb on - strand, within Dshi_0515at 499.501 kb on + strand, within Dshi_0515at 499.501 kb on + strand, within Dshi_0515at 499.570 kb on + strand, within Dshi_0515at 499.617 kb on - strand, within Dshi_0515at 499.643 kb on - strand, within Dshi_0515at 499.654 kb on - strand, within Dshi_0515at 499.664 kb on - strand, within Dshi_0515at 499.700 kb on + strand, within Dshi_0515at 499.768 kb on - strandat 499.781 kb on - strandat 499.795 kb on + strandat 499.852 kb on + strandat 499.884 kb on - strandat 500.008 kb on - strand, within Dshi_0516at 500.025 kb on + strand, within Dshi_0516at 500.033 kb on - strand, within Dshi_0516at 500.131 kb on + strand, within Dshi_0516at 500.181 kb on + strand, within Dshi_0516at 500.192 kb on + strand, within Dshi_0516at 500.313 kb on - strand, within Dshi_0516at 500.328 kb on - strand, within Dshi_0516at 500.382 kb on - strand, within Dshi_0516at 500.468 kb on + strand, within Dshi_0516at 500.473 kb on + strand, within Dshi_0516at 500.473 kb on + strand, within Dshi_0516at 500.476 kb on - strand, within Dshi_0516at 500.481 kb on - strand, within Dshi_0516at 500.533 kb on - strand, within Dshi_0516at 500.588 kb on - strand, within Dshi_0516at 500.604 kb on + strand, within Dshi_0516at 500.614 kb on + strand, within Dshi_0516at 500.622 kb on + strand, within Dshi_0516at 500.779 kb on + strandat 500.779 kb on + strandat 500.787 kb on - strandat 500.787 kb on - strandat 500.793 kb on + strandat 500.799 kb on + strandat 500.824 kb on - strandat 500.831 kb on + strandat 500.831 kb on + strandat 500.831 kb on + strandat 500.839 kb on - strandat 500.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml
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498,032 + -0.5
498,040 - +0.4
498,040 - -0.1
498,046 + +1.1
498,046 + -0.1
498,073 - -0.5
498,172 + -1.2
498,368 + Dshi_0513 0.10 -0.7
498,431 + Dshi_0513 0.24 -0.3
498,485 - Dshi_0513 0.35 -0.6
498,504 + Dshi_0513 0.40 -0.1
498,504 + Dshi_0513 0.40 +0.5
498,512 - Dshi_0513 0.41 -0.5
498,512 - Dshi_0513 0.41 -0.7
498,512 - Dshi_0513 0.41 -0.3
498,539 + Dshi_0513 0.47 +0.1
498,539 + Dshi_0513 0.47 -1.1
498,574 + Dshi_0513 0.54 -0.7
498,595 + Dshi_0513 0.59 +0.4
498,708 + Dshi_0513 0.83 +0.3
498,740 - +1.1
498,776 - -0.6
498,785 + -0.2
498,801 + Dshi_0514 0.20 -0.3
498,831 + Dshi_0514 0.36 +2.6
498,908 - Dshi_0514 0.78 -0.9
498,925 + Dshi_0514 0.87 +0.6
499,074 - Dshi_0515 0.14 -0.4
499,107 + Dshi_0515 0.18 -0.3
499,115 - Dshi_0515 0.19 +0.0
499,117 + Dshi_0515 0.19 -0.8
499,174 + Dshi_0515 0.26 -0.4
499,182 - Dshi_0515 0.26 -0.6
499,244 + Dshi_0515 0.33 +1.6
499,293 + Dshi_0515 0.39 +1.0
499,293 + Dshi_0515 0.39 +2.1
499,296 - Dshi_0515 0.39 -0.4
499,359 - Dshi_0515 0.46 +1.2
499,389 + Dshi_0515 0.49 +0.9
499,397 - Dshi_0515 0.50 +0.3
499,433 + Dshi_0515 0.54 +0.5
499,459 - Dshi_0515 0.57 +2.0
499,501 + Dshi_0515 0.62 +2.1
499,501 + Dshi_0515 0.62 +0.1
499,570 + Dshi_0515 0.70 -0.3
499,617 - Dshi_0515 0.75 -0.8
499,643 - Dshi_0515 0.78 +1.0
499,654 - Dshi_0515 0.79 +0.1
499,664 - Dshi_0515 0.80 +1.3
499,700 + Dshi_0515 0.84 -0.5
499,768 - -0.0
499,781 - -0.5
499,795 + +0.1
499,852 + +0.1
499,884 - -0.5
500,008 - Dshi_0516 0.16 -0.0
500,025 + Dshi_0516 0.18 +0.5
500,033 - Dshi_0516 0.19 -0.6
500,131 + Dshi_0516 0.28 -1.3
500,181 + Dshi_0516 0.34 -2.7
500,192 + Dshi_0516 0.35 +0.7
500,313 - Dshi_0516 0.47 -0.7
500,328 - Dshi_0516 0.48 +1.1
500,382 - Dshi_0516 0.54 -0.4
500,468 + Dshi_0516 0.63 -0.6
500,473 + Dshi_0516 0.63 +0.5
500,473 + Dshi_0516 0.63 -1.3
500,476 - Dshi_0516 0.63 -0.7
500,481 - Dshi_0516 0.64 -1.0
500,533 - Dshi_0516 0.69 -0.7
500,588 - Dshi_0516 0.75 -0.6
500,604 + Dshi_0516 0.76 -0.0
500,614 + Dshi_0516 0.77 -0.3
500,622 + Dshi_0516 0.78 +0.6
500,779 + -3.0
500,779 + -0.3
500,787 - +0.2
500,787 - -0.3
500,793 + -0.3
500,799 + -0.3
500,824 - -1.0
500,831 + -0.3
500,831 + -0.6
500,831 + +0.1
500,839 - -0.2
500,839 - -0.1

Or see this region's nucleotide sequence