Experiment: m.b. Bacitracin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0188 and Dshi_0189 are separated by 153 nucleotides Dshi_0189 and Dshi_0190 are separated by 3 nucleotides Dshi_0190 and Dshi_0191 are separated by 10 nucleotides
Dshi_0188: Dshi_0188 - hydroxymethylbutenyl pyrophosphate reductase (RefSeq), at 189,644 to 190,600
_0188
Dshi_0189: Dshi_0189 - cytochrome c class I (RefSeq), at 190,754 to 191,188
_0189
Dshi_0190: Dshi_0190 - membrane protein-like protein (RefSeq), at 191,192 to 191,707
_0190
Dshi_0191: Dshi_0191 - protein of unknown function DUF88 (RefSeq), at 191,718 to 192,290
_0191
Position (kb) 190
191
192 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 190.727 kb on + strand at 190.728 kb on - strand at 190.738 kb on + strand at 190.786 kb on + strand at 190.792 kb on + strand at 190.822 kb on + strand, within Dshi_0189 at 190.862 kb on + strand, within Dshi_0189 at 190.869 kb on - strand, within Dshi_0189 at 190.891 kb on - strand, within Dshi_0189 at 190.893 kb on + strand, within Dshi_0189 at 190.901 kb on - strand, within Dshi_0189 at 191.061 kb on - strand, within Dshi_0189 at 191.130 kb on - strand, within Dshi_0189 at 191.146 kb on + strand at 191.156 kb on + strand at 191.175 kb on - strand at 191.214 kb on + strand at 191.221 kb on - strand at 191.222 kb on - strand at 191.327 kb on + strand, within Dshi_0190 at 191.327 kb on + strand, within Dshi_0190 at 191.327 kb on + strand, within Dshi_0190 at 191.335 kb on - strand, within Dshi_0190 at 191.342 kb on + strand, within Dshi_0190 at 191.389 kb on - strand, within Dshi_0190 at 191.431 kb on - strand, within Dshi_0190 at 191.460 kb on + strand, within Dshi_0190 at 191.465 kb on + strand, within Dshi_0190 at 191.465 kb on + strand, within Dshi_0190 at 191.473 kb on - strand, within Dshi_0190 at 191.473 kb on - strand, within Dshi_0190 at 191.473 kb on - strand, within Dshi_0190 at 191.532 kb on + strand, within Dshi_0190 at 191.539 kb on + strand, within Dshi_0190 at 191.547 kb on - strand, within Dshi_0190 at 191.609 kb on - strand, within Dshi_0190 at 191.611 kb on - strand, within Dshi_0190 at 191.634 kb on + strand, within Dshi_0190 at 191.642 kb on - strand, within Dshi_0190 at 191.849 kb on + strand, within Dshi_0191 at 191.866 kb on + strand, within Dshi_0191 at 191.869 kb on - strand, within Dshi_0191 at 191.888 kb on - strand, within Dshi_0191 at 191.901 kb on - strand, within Dshi_0191 at 191.908 kb on - strand, within Dshi_0191 at 191.950 kb on + strand, within Dshi_0191 at 191.958 kb on + strand, within Dshi_0191 at 191.998 kb on + strand, within Dshi_0191 at 192.010 kb on + strand, within Dshi_0191 at 192.018 kb on - strand, within Dshi_0191 at 192.018 kb on - strand, within Dshi_0191 at 192.029 kb on - strand, within Dshi_0191 at 192.035 kb on - strand, within Dshi_0191 at 192.039 kb on + strand, within Dshi_0191 at 192.040 kb on + strand, within Dshi_0191 at 192.044 kb on + strand, within Dshi_0191 at 192.093 kb on + strand, within Dshi_0191 at 192.117 kb on + strand, within Dshi_0191 at 192.140 kb on + strand, within Dshi_0191 at 192.142 kb on + strand, within Dshi_0191 at 192.185 kb on - strand, within Dshi_0191
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.1 mg/ml remove 190,727 + +0.2 190,728 - -0.1 190,738 + -0.7 190,786 + -0.3 190,792 + -0.4 190,822 + Dshi_0189 0.16 -0.9 190,862 + Dshi_0189 0.25 -1.8 190,869 - Dshi_0189 0.26 -0.9 190,891 - Dshi_0189 0.31 -0.2 190,893 + Dshi_0189 0.32 -1.1 190,901 - Dshi_0189 0.34 +0.1 191,061 - Dshi_0189 0.71 +0.7 191,130 - Dshi_0189 0.86 +0.6 191,146 + -0.7 191,156 + -2.7 191,175 - -1.6 191,214 + +0.3 191,221 - +0.0 191,222 - -1.0 191,327 + Dshi_0190 0.26 -0.6 191,327 + Dshi_0190 0.26 -1.2 191,327 + Dshi_0190 0.26 -2.8 191,335 - Dshi_0190 0.28 -1.3 191,342 + Dshi_0190 0.29 +1.0 191,389 - Dshi_0190 0.38 +0.3 191,431 - Dshi_0190 0.46 -0.8 191,460 + Dshi_0190 0.52 +0.5 191,465 + Dshi_0190 0.53 -1.1 191,465 + Dshi_0190 0.53 -2.0 191,473 - Dshi_0190 0.54 +0.3 191,473 - Dshi_0190 0.54 -0.3 191,473 - Dshi_0190 0.54 -1.9 191,532 + Dshi_0190 0.66 -0.7 191,539 + Dshi_0190 0.67 -1.1 191,547 - Dshi_0190 0.69 -0.1 191,609 - Dshi_0190 0.81 +0.1 191,611 - Dshi_0190 0.81 -0.7 191,634 + Dshi_0190 0.86 -1.4 191,642 - Dshi_0190 0.87 -1.1 191,849 + Dshi_0191 0.23 -2.9 191,866 + Dshi_0191 0.26 -1.5 191,869 - Dshi_0191 0.26 -2.8 191,888 - Dshi_0191 0.30 -2.3 191,901 - Dshi_0191 0.32 -0.3 191,908 - Dshi_0191 0.33 -0.3 191,950 + Dshi_0191 0.40 -3.6 191,958 + Dshi_0191 0.42 -2.2 191,998 + Dshi_0191 0.49 -1.9 192,010 + Dshi_0191 0.51 -2.0 192,018 - Dshi_0191 0.52 -1.5 192,018 - Dshi_0191 0.52 -3.0 192,029 - Dshi_0191 0.54 -3.7 192,035 - Dshi_0191 0.55 -2.5 192,039 + Dshi_0191 0.56 -3.0 192,040 + Dshi_0191 0.56 -0.7 192,044 + Dshi_0191 0.57 -1.4 192,093 + Dshi_0191 0.65 -3.1 192,117 + Dshi_0191 0.70 -2.9 192,140 + Dshi_0191 0.74 -1.7 192,142 + Dshi_0191 0.74 -4.5 192,185 - Dshi_0191 0.82 -1.8
Or see this region's nucleotide sequence