Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0630

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0628 and Ga0059261_0629 overlap by 47 nucleotidesGa0059261_0629 and Ga0059261_0630 overlap by 13 nucleotidesGa0059261_0630 and Ga0059261_0631 overlap by 4 nucleotidesGa0059261_0631 and Ga0059261_0632 are separated by 7 nucleotides Ga0059261_0628: Ga0059261_0628 - L-threonine O-3-phosphate decarboxylase (EC 4.1.1.81), at 667,440 to 668,399 _0628 Ga0059261_0629: Ga0059261_0629 - cobalamin biosynthesis protein CobD, at 668,353 to 669,324 _0629 Ga0059261_0630: Ga0059261_0630 - adenosylcobyric acid synthase (glutamine-hydrolysing) (EC 6.3.5.10), at 669,312 to 670,775 _0630 Ga0059261_0631: Ga0059261_0631 - adenosylcobinamide kinase (EC 2.7.1.156)/adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 670,772 to 671,275 _0631 Ga0059261_0632: Ga0059261_0632 - hypothetical protein, at 671,283 to 673,532 _0632 Position (kb) 669 670 671Strain fitness (log2 ratio) -2 -1 0 1 2 3at 668.317 kb on - strandat 668.317 kb on - strandat 668.458 kb on + strand, within Ga0059261_0629at 668.458 kb on + strand, within Ga0059261_0629at 668.458 kb on + strand, within Ga0059261_0629at 668.459 kb on - strandat 668.459 kb on - strand, within Ga0059261_0629at 668.816 kb on + strand, within Ga0059261_0629at 668.816 kb on + strand, within Ga0059261_0629at 668.889 kb on - strand, within Ga0059261_0629at 668.908 kb on - strand, within Ga0059261_0629at 668.908 kb on - strand, within Ga0059261_0629at 668.917 kb on + strand, within Ga0059261_0629at 668.917 kb on + strand, within Ga0059261_0629at 668.918 kb on - strand, within Ga0059261_0629at 668.918 kb on - strand, within Ga0059261_0629at 668.918 kb on - strand, within Ga0059261_0629at 668.918 kb on - strand, within Ga0059261_0629at 668.918 kb on - strand, within Ga0059261_0629at 669.178 kb on + strand, within Ga0059261_0629at 669.178 kb on + strand, within Ga0059261_0629at 669.178 kb on + strand, within Ga0059261_0629at 669.178 kb on + strandat 669.179 kb on - strand, within Ga0059261_0629at 669.179 kb on - strand, within Ga0059261_0629at 669.179 kb on - strand, within Ga0059261_0629at 669.265 kb on + strandat 669.265 kb on + strandat 669.265 kb on + strandat 669.265 kb on + strandat 669.266 kb on - strandat 669.266 kb on - strandat 669.266 kb on - strandat 669.266 kb on - strandat 669.266 kb on - strandat 669.521 kb on + strand, within Ga0059261_0630at 669.522 kb on - strand, within Ga0059261_0630at 669.755 kb on + strand, within Ga0059261_0630at 669.755 kb on + strand, within Ga0059261_0630at 669.755 kb on + strand, within Ga0059261_0630at 669.755 kb on + strand, within Ga0059261_0630at 669.756 kb on - strand, within Ga0059261_0630at 670.102 kb on + strand, within Ga0059261_0630at 670.147 kb on + strand, within Ga0059261_0630at 670.147 kb on + strand, within Ga0059261_0630at 670.148 kb on - strand, within Ga0059261_0630at 670.148 kb on - strand, within Ga0059261_0630at 670.148 kb on - strand, within Ga0059261_0630at 670.148 kb on - strand, within Ga0059261_0630at 670.256 kb on + strand, within Ga0059261_0630at 670.315 kb on - strand, within Ga0059261_0630at 670.361 kb on + strand, within Ga0059261_0630at 670.384 kb on + strand, within Ga0059261_0630at 670.385 kb on - strand, within Ga0059261_0630at 670.474 kb on - strand, within Ga0059261_0630at 670.474 kb on - strand, within Ga0059261_0630at 670.474 kb on - strand, within Ga0059261_0630at 670.484 kb on + strand, within Ga0059261_0630at 670.484 kb on + strand, within Ga0059261_0630at 670.484 kb on + strand, within Ga0059261_0630at 670.484 kb on + strand, within Ga0059261_0630at 670.484 kb on + strand, within Ga0059261_0630at 670.484 kb on + strand, within Ga0059261_0630at 670.484 kb on + strand, within Ga0059261_0630at 670.484 kb on + strand, within Ga0059261_0630at 670.484 kb on + strand, within Ga0059261_0630at 670.484 kb on + strand, within Ga0059261_0630at 670.484 kb on + strand, within Ga0059261_0630at 670.485 kb on - strand, within Ga0059261_0630at 670.485 kb on - strand, within Ga0059261_0630at 670.485 kb on - strand, within Ga0059261_0630at 670.587 kb on + strand, within Ga0059261_0630at 670.587 kb on + strand, within Ga0059261_0630at 670.587 kb on + strand, within Ga0059261_0630at 670.587 kb on + strand, within Ga0059261_0630at 670.587 kb on + strand, within Ga0059261_0630at 670.587 kb on + strand, within Ga0059261_0630at 670.587 kb on + strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.588 kb on - strand, within Ga0059261_0630at 670.668 kb on + strandat 670.668 kb on + strandat 670.669 kb on - strandat 670.669 kb on - strandat 671.023 kb on + strand, within Ga0059261_0631at 671.023 kb on + strand, within Ga0059261_0631at 671.023 kb on + strand, within Ga0059261_0631at 671.024 kb on - strand, within Ga0059261_0631at 671.024 kb on - strand, within Ga0059261_0631at 671.024 kb on - strand, within Ga0059261_0631at 671.024 kb on - strand, within Ga0059261_0631at 671.062 kb on + strand, within Ga0059261_0631at 671.063 kb on - strand, within Ga0059261_0631at 671.273 kb on + strandat 671.273 kb on + strandat 671.273 kb on + strandat 671.274 kb on - strandat 671.274 kb on - strandat 671.274 kb on - strandat 671.284 kb on + strandat 671.284 kb on + strandat 671.285 kb on - strandat 671.326 kb on + strandat 671.327 kb on - strandat 671.327 kb on - strandat 671.482 kb on + strandat 671.482 kb on + strandat 671.482 kb on + strandat 671.482 kb on + strandat 671.482 kb on + strandat 671.482 kb on + strandat 671.483 kb on - strandat 671.483 kb on - strandat 671.564 kb on + strand, within Ga0059261_0632at 671.564 kb on + strand, within Ga0059261_0632at 671.564 kb on + strand, within Ga0059261_0632at 671.565 kb on - strand, within Ga0059261_0632at 671.565 kb on - strand, within Ga0059261_0632at 671.565 kb on - strand, within Ga0059261_0632at 671.565 kb on - strand, within Ga0059261_0632at 671.565 kb on - strand, within Ga0059261_0632at 671.605 kb on + strand, within Ga0059261_0632at 671.605 kb on + strand, within Ga0059261_0632at 671.605 kb on + strand, within Ga0059261_0632at 671.605 kb on + strand, within Ga0059261_0632at 671.605 kb on + strand, within Ga0059261_0632at 671.605 kb on + strand, within Ga0059261_0632at 671.605 kb on + strand, within Ga0059261_0632at 671.606 kb on - strand, within Ga0059261_0632at 671.606 kb on - strand, within Ga0059261_0632at 671.606 kb on - strand, within Ga0059261_0632at 671.606 kb on - strand, within Ga0059261_0632at 671.606 kb on - strand, within Ga0059261_0632

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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668,317 - -0.1
668,317 - -0.3
668,458 + Ga0059261_0629 0.11 -0.3
668,458 + Ga0059261_0629 0.11 +1.4
668,458 + Ga0059261_0629 0.11 -0.2
668,459 - +0.8
668,459 - Ga0059261_0629 0.11 +0.1
668,816 + Ga0059261_0629 0.48 -0.5
668,816 + Ga0059261_0629 0.48 +0.6
668,889 - Ga0059261_0629 0.55 +0.4
668,908 - Ga0059261_0629 0.57 +1.3
668,908 - Ga0059261_0629 0.57 +0.8
668,917 + Ga0059261_0629 0.58 +0.8
668,917 + Ga0059261_0629 0.58 -0.5
668,918 - Ga0059261_0629 0.58 -0.9
668,918 - Ga0059261_0629 0.58 +0.4
668,918 - Ga0059261_0629 0.58 -1.2
668,918 - Ga0059261_0629 0.58 -0.2
668,918 - Ga0059261_0629 0.58 +0.8
669,178 + Ga0059261_0629 0.85 -1.0
669,178 + Ga0059261_0629 0.85 +0.4
669,178 + Ga0059261_0629 0.85 -0.7
669,178 + -2.2
669,179 - Ga0059261_0629 0.85 +0.8
669,179 - Ga0059261_0629 0.85 +0.3
669,179 - Ga0059261_0629 0.85 +0.2
669,265 + -0.3
669,265 + -1.5
669,265 + +0.2
669,265 + +1.4
669,266 - -0.2
669,266 - -0.0
669,266 - +0.2
669,266 - -0.5
669,266 - -0.7
669,521 + Ga0059261_0630 0.14 +0.1
669,522 - Ga0059261_0630 0.14 +2.8
669,755 + Ga0059261_0630 0.30 -0.2
669,755 + Ga0059261_0630 0.30 +0.6
669,755 + Ga0059261_0630 0.30 -0.7
669,755 + Ga0059261_0630 0.30 -0.2
669,756 - Ga0059261_0630 0.30 +0.0
670,102 + Ga0059261_0630 0.54 -1.0
670,147 + Ga0059261_0630 0.57 -1.8
670,147 + Ga0059261_0630 0.57 +0.4
670,148 - Ga0059261_0630 0.57 -2.0
670,148 - Ga0059261_0630 0.57 +0.7
670,148 - Ga0059261_0630 0.57 +0.9
670,148 - Ga0059261_0630 0.57 -1.5
670,256 + Ga0059261_0630 0.64 +0.2
670,315 - Ga0059261_0630 0.69 +0.1
670,361 + Ga0059261_0630 0.72 +1.0
670,384 + Ga0059261_0630 0.73 +0.0
670,385 - Ga0059261_0630 0.73 +1.4
670,474 - Ga0059261_0630 0.79 +1.4
670,474 - Ga0059261_0630 0.79 -0.1
670,474 - Ga0059261_0630 0.79 +0.0
670,484 + Ga0059261_0630 0.80 -0.8
670,484 + Ga0059261_0630 0.80 +1.2
670,484 + Ga0059261_0630 0.80 -1.3
670,484 + Ga0059261_0630 0.80 +0.1
670,484 + Ga0059261_0630 0.80 -1.2
670,484 + Ga0059261_0630 0.80 +0.4
670,484 + Ga0059261_0630 0.80 -0.2
670,484 + Ga0059261_0630 0.80 -1.8
670,484 + Ga0059261_0630 0.80 +0.2
670,484 + Ga0059261_0630 0.80 +0.5
670,484 + Ga0059261_0630 0.80 +0.2
670,485 - Ga0059261_0630 0.80 +0.6
670,485 - Ga0059261_0630 0.80 +0.5
670,485 - Ga0059261_0630 0.80 +0.2
670,587 + Ga0059261_0630 0.87 +0.4
670,587 + Ga0059261_0630 0.87 -0.6
670,587 + Ga0059261_0630 0.87 +0.6
670,587 + Ga0059261_0630 0.87 -0.5
670,587 + Ga0059261_0630 0.87 -0.0
670,587 + Ga0059261_0630 0.87 -0.2
670,587 + Ga0059261_0630 0.87 +0.3
670,588 - Ga0059261_0630 0.87 -1.7
670,588 - Ga0059261_0630 0.87 -0.6
670,588 - Ga0059261_0630 0.87 -0.7
670,588 - Ga0059261_0630 0.87 -0.7
670,588 - Ga0059261_0630 0.87 -0.2
670,588 - Ga0059261_0630 0.87 +0.7
670,588 - Ga0059261_0630 0.87 +0.5
670,588 - Ga0059261_0630 0.87 -0.2
670,588 - Ga0059261_0630 0.87 -0.3
670,588 - Ga0059261_0630 0.87 -0.4
670,588 - Ga0059261_0630 0.87 +1.3
670,588 - Ga0059261_0630 0.87 -0.6
670,588 - Ga0059261_0630 0.87 +1.1
670,588 - Ga0059261_0630 0.87 +0.6
670,588 - Ga0059261_0630 0.87 +0.5
670,588 - Ga0059261_0630 0.87 -0.2
670,588 - Ga0059261_0630 0.87 -0.2
670,668 + +0.9
670,668 + +0.8
670,669 - -1.7
670,669 - -0.2
671,023 + Ga0059261_0631 0.50 +0.2
671,023 + Ga0059261_0631 0.50 -0.7
671,023 + Ga0059261_0631 0.50 -0.0
671,024 - Ga0059261_0631 0.50 +0.3
671,024 - Ga0059261_0631 0.50 -0.2
671,024 - Ga0059261_0631 0.50 +0.8
671,024 - Ga0059261_0631 0.50 +0.0
671,062 + Ga0059261_0631 0.58 -0.6
671,063 - Ga0059261_0631 0.58 +1.0
671,273 + +0.2
671,273 + -0.6
671,273 + +0.2
671,274 - +0.4
671,274 - -0.1
671,274 - -0.0
671,284 + -0.2
671,284 + -0.8
671,285 - -0.2
671,326 + -0.6
671,327 - +1.6
671,327 - -0.2
671,482 + +0.1
671,482 + -0.1
671,482 + -0.2
671,482 + +0.2
671,482 + +0.1
671,482 + -0.7
671,483 - -1.7
671,483 - -0.1
671,564 + Ga0059261_0632 0.12 -2.2
671,564 + Ga0059261_0632 0.12 +0.3
671,564 + Ga0059261_0632 0.12 +0.2
671,565 - Ga0059261_0632 0.13 -0.2
671,565 - Ga0059261_0632 0.13 +1.8
671,565 - Ga0059261_0632 0.13 +0.1
671,565 - Ga0059261_0632 0.13 +0.1
671,565 - Ga0059261_0632 0.13 -0.5
671,605 + Ga0059261_0632 0.14 -0.6
671,605 + Ga0059261_0632 0.14 +0.1
671,605 + Ga0059261_0632 0.14 +0.3
671,605 + Ga0059261_0632 0.14 -1.2
671,605 + Ga0059261_0632 0.14 +0.1
671,605 + Ga0059261_0632 0.14 -0.0
671,605 + Ga0059261_0632 0.14 -1.6
671,606 - Ga0059261_0632 0.14 +0.1
671,606 - Ga0059261_0632 0.14 +0.6
671,606 - Ga0059261_0632 0.14 -0.2
671,606 - Ga0059261_0632 0.14 +0.4
671,606 - Ga0059261_0632 0.14 -1.3

Or see this region's nucleotide sequence