Strain Fitness in Shewanella loihica PV-4 around Shew_2514

Experiment: Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2512 and Shew_2513 are separated by 18 nucleotidesShew_2513 and Shew_2514 are separated by 73 nucleotidesShew_2514 and Shew_2515 are separated by 250 nucleotidesShew_2515 and Shew_2516 are separated by 83 nucleotides Shew_2512: Shew_2512 - peptidylprolyl isomerase (RefSeq), at 2,956,409 to 2,956,921 _2512 Shew_2513: Shew_2513 - UDP-2,3-diacylglucosamine hydrolase (RefSeq), at 2,956,940 to 2,957,668 _2513 Shew_2514: Shew_2514 - tRNA--hydroxylase (RefSeq), at 2,957,742 to 2,958,512 _2514 Shew_2515: Shew_2515 - hypothetical protein (RefSeq), at 2,958,763 to 2,959,359 _2515 Shew_2516: Shew_2516 - glutaminyl-tRNA synthetase (RefSeq), at 2,959,443 to 2,961,113 _2516 Position (kb) 2957 2958 2959Strain fitness (log2 ratio) -1 0 1at 2958.029 kb on + strand, within Shew_2514at 2958.102 kb on - strand, within Shew_2514at 2958.196 kb on + strand, within Shew_2514at 2959.193 kb on + strand, within Shew_2515at 2959.216 kb on - strand, within Shew_2515at 2959.216 kb on - strand, within Shew_2515at 2959.216 kb on - strand, within Shew_2515at 2959.277 kb on + strand, within Shew_2515at 2959.282 kb on + strand, within Shew_2515at 2959.411 kb on - strandat 2959.433 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.5 mM
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2,958,029 + Shew_2514 0.37 -1.6
2,958,102 - Shew_2514 0.47 -0.6
2,958,196 + Shew_2514 0.59 +0.1
2,959,193 + Shew_2515 0.72 -0.2
2,959,216 - Shew_2515 0.76 +0.6
2,959,216 - Shew_2515 0.76 +0.0
2,959,216 - Shew_2515 0.76 -0.0
2,959,277 + Shew_2515 0.86 -0.3
2,959,282 + Shew_2515 0.87 +0.0
2,959,411 - -0.2
2,959,433 - +1.0

Or see this region's nucleotide sequence