Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3983 and Dshi_3984 are separated by 187 nucleotides Dshi_3984 and Dshi_3985 are separated by 12 nucleotides
Dshi_3983: Dshi_3983 - type II secretion system protein E (RefSeq), at 41,929 to 42,915
_3983
Dshi_3984: Dshi_3984 - hypothetical protein (RefSeq), at 43,103 to 43,513
_3984
Dshi_3985: Dshi_3985 - TrbL/VirB6 plasmid conjugal transfer protein (RefSeq), at 43,526 to 44,602
_3985
Position (kb) 43
44 Strain fitness (log2 ratio) -2
-1
0
1 at 42.133 kb on - strand, within Dshi_3983 at 42.178 kb on - strand, within Dshi_3983 at 42.178 kb on - strand, within Dshi_3983 at 42.364 kb on + strand, within Dshi_3983 at 42.392 kb on - strand, within Dshi_3983 at 42.492 kb on + strand, within Dshi_3983 at 42.607 kb on - strand, within Dshi_3983 at 42.665 kb on + strand, within Dshi_3983 at 42.747 kb on - strand, within Dshi_3983 at 42.760 kb on + strand, within Dshi_3983 at 42.791 kb on - strand, within Dshi_3983 at 42.807 kb on - strand, within Dshi_3983 at 42.993 kb on - strand at 42.993 kb on - strand at 43.008 kb on - strand at 43.009 kb on + strand at 43.009 kb on + strand at 43.009 kb on + strand at 43.009 kb on + strand at 43.009 kb on + strand at 43.081 kb on - strand at 43.351 kb on + strand, within Dshi_3984 at 43.376 kb on + strand, within Dshi_3984 at 43.485 kb on - strand at 43.510 kb on - strand at 43.556 kb on + strand at 43.569 kb on - strand at 43.588 kb on - strand at 43.591 kb on + strand at 43.599 kb on - strand at 43.605 kb on + strand at 43.620 kb on - strand at 43.628 kb on + strand at 43.646 kb on + strand, within Dshi_3985 at 43.765 kb on + strand, within Dshi_3985 at 43.765 kb on + strand, within Dshi_3985 at 43.785 kb on - strand, within Dshi_3985 at 43.790 kb on + strand, within Dshi_3985 at 43.800 kb on - strand, within Dshi_3985 at 43.814 kb on - strand, within Dshi_3985 at 43.815 kb on - strand, within Dshi_3985 at 43.853 kb on - strand, within Dshi_3985 at 43.853 kb on - strand, within Dshi_3985 at 43.853 kb on - strand, within Dshi_3985 at 43.936 kb on - strand, within Dshi_3985 at 43.942 kb on + strand, within Dshi_3985 at 43.952 kb on + strand, within Dshi_3985 at 44.012 kb on - strand, within Dshi_3985 at 44.026 kb on + strand, within Dshi_3985 at 44.044 kb on + strand, within Dshi_3985 at 44.143 kb on - strand, within Dshi_3985 at 44.162 kb on - strand at 44.181 kb on - strand, within Dshi_3985 at 44.342 kb on - strand, within Dshi_3985 at 44.352 kb on - strand, within Dshi_3985 at 44.352 kb on - strand, within Dshi_3985 at 44.393 kb on + strand, within Dshi_3985 at 44.402 kb on - strand, within Dshi_3985 at 44.445 kb on + strand, within Dshi_3985 at 44.452 kb on + strand, within Dshi_3985 at 44.460 kb on - strand, within Dshi_3985 at 44.490 kb on - strand, within Dshi_3985 at 44.501 kb on + strand at 44.502 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 42,133 - Dshi_3983 0.21 -0.0 42,178 - Dshi_3983 0.25 -0.0 42,178 - Dshi_3983 0.25 +0.1 42,364 + Dshi_3983 0.44 -0.2 42,392 - Dshi_3983 0.47 -2.0 42,492 + Dshi_3983 0.57 -0.8 42,607 - Dshi_3983 0.69 +0.5 42,665 + Dshi_3983 0.75 +0.0 42,747 - Dshi_3983 0.83 -0.7 42,760 + Dshi_3983 0.84 +0.2 42,791 - Dshi_3983 0.87 -0.3 42,807 - Dshi_3983 0.89 -0.4 42,993 - -0.2 42,993 - -0.1 43,008 - -0.1 43,009 + +0.1 43,009 + -0.5 43,009 + -0.2 43,009 + +1.0 43,009 + +1.3 43,081 - -0.1 43,351 + Dshi_3984 0.60 -0.6 43,376 + Dshi_3984 0.66 -1.3 43,485 - +0.3 43,510 - +0.0 43,556 + -1.8 43,569 - +0.1 43,588 - -0.2 43,591 + -0.1 43,599 - +0.3 43,605 + -0.1 43,620 - -0.5 43,628 + +0.7 43,646 + Dshi_3985 0.11 -0.4 43,765 + Dshi_3985 0.22 +1.5 43,765 + Dshi_3985 0.22 +0.6 43,785 - Dshi_3985 0.24 +1.1 43,790 + Dshi_3985 0.25 -1.1 43,800 - Dshi_3985 0.25 +0.8 43,814 - Dshi_3985 0.27 -0.5 43,815 - Dshi_3985 0.27 -1.0 43,853 - Dshi_3985 0.30 +0.5 43,853 - Dshi_3985 0.30 +0.2 43,853 - Dshi_3985 0.30 +0.1 43,936 - Dshi_3985 0.38 -1.2 43,942 + Dshi_3985 0.39 +0.1 43,952 + Dshi_3985 0.40 -0.6 44,012 - Dshi_3985 0.45 -2.5 44,026 + Dshi_3985 0.46 -0.5 44,044 + Dshi_3985 0.48 -0.4 44,143 - Dshi_3985 0.57 +0.1 44,162 - +1.5 44,181 - Dshi_3985 0.61 +0.3 44,342 - Dshi_3985 0.76 -0.7 44,352 - Dshi_3985 0.77 -0.5 44,352 - Dshi_3985 0.77 +0.2 44,393 + Dshi_3985 0.81 -0.3 44,402 - Dshi_3985 0.81 +1.4 44,445 + Dshi_3985 0.85 -0.8 44,452 + Dshi_3985 0.86 -0.8 44,460 - Dshi_3985 0.87 -0.5 44,490 - Dshi_3985 0.90 -0.7 44,501 + -1.1 44,502 + -1.0
Or see this region's nucleotide sequence