Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3865

Experiment: m.b. Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3863 and Dshi_3864 are separated by 16 nucleotidesDshi_3864 and Dshi_3865 are separated by 122 nucleotidesDshi_3865 and Dshi_3866 are separated by 111 nucleotides Dshi_3863: Dshi_3863 - hypothetical protein (RefSeq), at 72,755 to 73,885 _3863 Dshi_3864: Dshi_3864 - sulfotransferase (RefSeq), at 73,902 to 74,681 _3864 Dshi_3865: Dshi_3865 - hypothetical protein (RefSeq), at 74,804 to 75,793 _3865 Dshi_3866: Dshi_3866 - glycosyl transferase group 1 (RefSeq), at 75,905 to 79,813 _3866 Position (kb) 74 75 76Strain fitness (log2 ratio) -2 -1 0 1 2at 73.857 kb on - strandat 73.937 kb on + strandat 74.006 kb on + strand, within Dshi_3864at 74.079 kb on + strand, within Dshi_3864at 74.122 kb on - strand, within Dshi_3864at 74.138 kb on - strand, within Dshi_3864at 74.262 kb on - strand, within Dshi_3864at 74.471 kb on + strand, within Dshi_3864at 74.538 kb on - strand, within Dshi_3864at 74.549 kb on + strand, within Dshi_3864at 74.549 kb on + strand, within Dshi_3864at 74.574 kb on + strand, within Dshi_3864at 74.576 kb on + strand, within Dshi_3864at 74.625 kb on - strandat 74.685 kb on + strandat 74.693 kb on - strandat 74.694 kb on - strandat 74.694 kb on - strandat 74.793 kb on - strandat 74.862 kb on + strandat 74.914 kb on + strand, within Dshi_3865at 74.954 kb on - strand, within Dshi_3865at 75.023 kb on + strand, within Dshi_3865at 75.078 kb on + strand, within Dshi_3865at 75.086 kb on - strand, within Dshi_3865at 75.252 kb on - strand, within Dshi_3865at 75.278 kb on - strand, within Dshi_3865at 75.291 kb on - strand, within Dshi_3865at 75.376 kb on - strand, within Dshi_3865at 75.376 kb on - strand, within Dshi_3865at 75.479 kb on + strand, within Dshi_3865at 75.485 kb on - strand, within Dshi_3865at 75.487 kb on - strand, within Dshi_3865at 75.499 kb on + strand, within Dshi_3865at 75.542 kb on - strand, within Dshi_3865at 75.578 kb on + strand, within Dshi_3865at 75.604 kb on + strand, within Dshi_3865at 75.604 kb on + strand, within Dshi_3865at 75.624 kb on + strand, within Dshi_3865at 75.668 kb on - strand, within Dshi_3865at 75.773 kb on - strandat 75.792 kb on + strandat 75.910 kb on - strandat 75.969 kb on + strandat 76.099 kb on + strandat 76.172 kb on + strandat 76.273 kb on + strandat 76.401 kb on - strand, within Dshi_3866at 76.408 kb on + strand, within Dshi_3866at 76.522 kb on + strand, within Dshi_3866at 76.530 kb on - strand, within Dshi_3866at 76.587 kb on - strand, within Dshi_3866at 76.621 kb on - strand, within Dshi_3866at 76.698 kb on + strand, within Dshi_3866at 76.777 kb on + strand, within Dshi_3866at 76.777 kb on + strand, within Dshi_3866at 76.784 kb on - strand, within Dshi_3866at 76.785 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml
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73,857 - +0.1
73,937 + -0.2
74,006 + Dshi_3864 0.13 -0.2
74,079 + Dshi_3864 0.23 +1.5
74,122 - Dshi_3864 0.28 -0.1
74,138 - Dshi_3864 0.30 -1.0
74,262 - Dshi_3864 0.46 -0.2
74,471 + Dshi_3864 0.73 -0.6
74,538 - Dshi_3864 0.82 -0.4
74,549 + Dshi_3864 0.83 -0.4
74,549 + Dshi_3864 0.83 -0.3
74,574 + Dshi_3864 0.86 -0.4
74,576 + Dshi_3864 0.86 -2.1
74,625 - +0.0
74,685 + -0.6
74,693 - -1.8
74,694 - +0.1
74,694 - -0.4
74,793 - -1.7
74,862 + -0.7
74,914 + Dshi_3865 0.11 -0.4
74,954 - Dshi_3865 0.15 -0.6
75,023 + Dshi_3865 0.22 -0.6
75,078 + Dshi_3865 0.28 +0.1
75,086 - Dshi_3865 0.28 -0.7
75,252 - Dshi_3865 0.45 -1.2
75,278 - Dshi_3865 0.48 -0.7
75,291 - Dshi_3865 0.49 -0.0
75,376 - Dshi_3865 0.58 -1.6
75,376 - Dshi_3865 0.58 -0.5
75,479 + Dshi_3865 0.68 -0.8
75,485 - Dshi_3865 0.69 -1.8
75,487 - Dshi_3865 0.69 -0.6
75,499 + Dshi_3865 0.70 -0.3
75,542 - Dshi_3865 0.75 -0.1
75,578 + Dshi_3865 0.78 -0.7
75,604 + Dshi_3865 0.81 -0.7
75,604 + Dshi_3865 0.81 -1.3
75,624 + Dshi_3865 0.83 +0.2
75,668 - Dshi_3865 0.87 -2.3
75,773 - -0.1
75,792 + -0.7
75,910 - +0.5
75,969 + +2.0
76,099 + +0.2
76,172 + +0.6
76,273 + +0.6
76,401 - Dshi_3866 0.13 +0.5
76,408 + Dshi_3866 0.13 -0.2
76,522 + Dshi_3866 0.16 +1.0
76,530 - Dshi_3866 0.16 +0.9
76,587 - Dshi_3866 0.17 -0.4
76,621 - Dshi_3866 0.18 +0.1
76,698 + Dshi_3866 0.20 +0.8
76,777 + Dshi_3866 0.22 +0.4
76,777 + Dshi_3866 0.22 -0.1
76,784 - Dshi_3866 0.22 +0.3
76,785 - +0.2

Or see this region's nucleotide sequence