Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3834 and Dshi_3835 overlap by 26 nucleotides Dshi_3835 and Dshi_3836 overlap by 4 nucleotides Dshi_3836 and Dshi_3837 are separated by 136 nucleotides
Dshi_3834: Dshi_3834 - signal transduction histidine kinase (RefSeq), at 43,171 to 44,907
_3834
Dshi_3835: Dshi_3835 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 44,882 to 45,445
_3835
Dshi_3836: Dshi_3836 - hypothetical protein (RefSeq), at 45,442 to 45,621
_3836
Dshi_3837: Dshi_3837 - response regulator receiver and SARP domain protein (RefSeq), at 45,758 to 46,573
_3837
Position (kb)
45
46 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 44.446 kb on - strand, within Dshi_3834 at 44.480 kb on + strand, within Dshi_3834 at 44.542 kb on + strand, within Dshi_3834 at 44.551 kb on - strand, within Dshi_3834 at 44.715 kb on - strand, within Dshi_3834 at 44.715 kb on - strand, within Dshi_3834 at 44.715 kb on - strand, within Dshi_3834 at 44.752 kb on + strand at 44.879 kb on + strand at 44.879 kb on + strand at 44.917 kb on + strand at 44.958 kb on + strand, within Dshi_3835 at 44.985 kb on - strand, within Dshi_3835 at 45.255 kb on + strand, within Dshi_3835 at 45.258 kb on - strand, within Dshi_3835 at 45.312 kb on + strand, within Dshi_3835 at 45.320 kb on - strand, within Dshi_3835 at 45.320 kb on - strand, within Dshi_3835 at 45.321 kb on + strand, within Dshi_3835 at 45.426 kb on + strand at 45.519 kb on - strand, within Dshi_3836 at 45.534 kb on - strand, within Dshi_3836 at 45.545 kb on - strand, within Dshi_3836 at 45.623 kb on - strand at 45.623 kb on - strand at 45.624 kb on - strand at 45.664 kb on - strand at 45.759 kb on + strand at 45.771 kb on + strand at 45.801 kb on - strand at 45.857 kb on + strand, within Dshi_3837 at 45.870 kb on - strand, within Dshi_3837 at 45.935 kb on - strand, within Dshi_3837 at 45.980 kb on - strand, within Dshi_3837 at 46.026 kb on - strand, within Dshi_3837 at 46.026 kb on - strand, within Dshi_3837 at 46.033 kb on - strand, within Dshi_3837 at 46.085 kb on + strand, within Dshi_3837 at 46.093 kb on - strand, within Dshi_3837 at 46.297 kb on - strand, within Dshi_3837 at 46.374 kb on - strand, within Dshi_3837 at 46.437 kb on - strand, within Dshi_3837 at 46.466 kb on + strand, within Dshi_3837 at 46.475 kb on - strand, within Dshi_3837 at 46.476 kb on - strand, within Dshi_3837 at 46.493 kb on + strand at 46.503 kb on - strand at 46.503 kb on - strand at 46.524 kb on - strand at 46.531 kb on - strand at 46.592 kb on - strand at 46.592 kb on - strand at 46.603 kb on - strand at 46.604 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 44,446 - Dshi_3834 0.73 -0.5 44,480 + Dshi_3834 0.75 -0.4 44,542 + Dshi_3834 0.79 -0.2 44,551 - Dshi_3834 0.79 -0.8 44,715 - Dshi_3834 0.89 -0.7 44,715 - Dshi_3834 0.89 +0.6 44,715 - Dshi_3834 0.89 -0.3 44,752 + +0.4 44,879 + -0.2 44,879 + -0.4 44,917 + -0.2 44,958 + Dshi_3835 0.13 +1.6 44,985 - Dshi_3835 0.18 +0.0 45,255 + Dshi_3835 0.66 +0.9 45,258 - Dshi_3835 0.67 -0.1 45,312 + Dshi_3835 0.76 +0.9 45,320 - Dshi_3835 0.78 +0.2 45,320 - Dshi_3835 0.78 +1.2 45,321 + Dshi_3835 0.78 -2.5 45,426 + -1.4 45,519 - Dshi_3836 0.43 +2.0 45,534 - Dshi_3836 0.51 +1.3 45,545 - Dshi_3836 0.57 -1.1 45,623 - +0.3 45,623 - +0.1 45,624 - -0.9 45,664 - -2.3 45,759 + +1.2 45,771 + +0.6 45,801 - -0.4 45,857 + Dshi_3837 0.12 -0.3 45,870 - Dshi_3837 0.14 -0.6 45,935 - Dshi_3837 0.22 +0.1 45,980 - Dshi_3837 0.27 -0.6 46,026 - Dshi_3837 0.33 -0.3 46,026 - Dshi_3837 0.33 -1.2 46,033 - Dshi_3837 0.34 -1.4 46,085 + Dshi_3837 0.40 -0.4 46,093 - Dshi_3837 0.41 -0.3 46,297 - Dshi_3837 0.66 -1.1 46,374 - Dshi_3837 0.75 +0.7 46,437 - Dshi_3837 0.83 -0.2 46,466 + Dshi_3837 0.87 +0.3 46,475 - Dshi_3837 0.88 -0.2 46,476 - Dshi_3837 0.88 -1.1 46,493 + -0.8 46,503 - -0.8 46,503 - +0.0 46,524 - -0.2 46,531 - +0.0 46,592 - +0.4 46,592 - -0.8 46,603 - -0.3 46,604 + -2.3
Or see this region's nucleotide sequence