Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3558

Experiment: m.b. Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3557 and Dshi_3558 are separated by 12 nucleotidesDshi_3558 and Dshi_3559 are separated by 20 nucleotides Dshi_3557: Dshi_3557 - putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase (RefSeq), at 3,741,883 to 3,743,700 _3557 Dshi_3558: Dshi_3558 - hypothetical protein (RefSeq), at 3,743,713 to 3,744,228 _3558 Dshi_3559: Dshi_3559 - DNA polymerase III, epsilon subunit (RefSeq), at 3,744,249 to 3,745,706 _3559 Position (kb) 3743 3744 3745Strain fitness (log2 ratio) -3 -2 -1 0 1at 3742.738 kb on - strand, within Dshi_3557at 3742.951 kb on + strand, within Dshi_3557at 3743.133 kb on + strand, within Dshi_3557at 3743.204 kb on - strand, within Dshi_3557at 3743.220 kb on - strand, within Dshi_3557at 3743.280 kb on - strand, within Dshi_3557at 3743.298 kb on + strand, within Dshi_3557at 3743.318 kb on - strand, within Dshi_3557at 3743.487 kb on + strand, within Dshi_3557at 3743.521 kb on - strandat 3743.521 kb on - strandat 3743.545 kb on + strandat 3743.593 kb on - strandat 3743.695 kb on + strandat 3743.702 kb on - strandat 3743.761 kb on + strandat 3743.789 kb on - strand, within Dshi_3558at 3743.951 kb on - strand, within Dshi_3558at 3743.995 kb on + strand, within Dshi_3558at 3744.015 kb on - strand, within Dshi_3558at 3744.109 kb on + strand, within Dshi_3558at 3744.175 kb on + strand, within Dshi_3558at 3744.185 kb on + strandat 3744.187 kb on + strandat 3744.187 kb on + strandat 3744.193 kb on - strandat 3744.207 kb on + strandat 3744.234 kb on + strandat 3744.265 kb on + strandat 3744.265 kb on + strandat 3744.326 kb on + strandat 3744.615 kb on + strand, within Dshi_3559at 3744.644 kb on - strand, within Dshi_3559at 3744.671 kb on + strand, within Dshi_3559at 3744.681 kb on + strand, within Dshi_3559at 3744.689 kb on - strand, within Dshi_3559at 3744.695 kb on + strand, within Dshi_3559at 3744.782 kb on - strand, within Dshi_3559at 3744.793 kb on + strand, within Dshi_3559at 3744.970 kb on + strand, within Dshi_3559at 3744.970 kb on + strand, within Dshi_3559

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml
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3,742,738 - Dshi_3557 0.47 -0.6
3,742,951 + Dshi_3557 0.59 -1.6
3,743,133 + Dshi_3557 0.69 -0.8
3,743,204 - Dshi_3557 0.73 -0.8
3,743,220 - Dshi_3557 0.74 -0.3
3,743,280 - Dshi_3557 0.77 +0.1
3,743,298 + Dshi_3557 0.78 -0.6
3,743,318 - Dshi_3557 0.79 +0.6
3,743,487 + Dshi_3557 0.88 -0.8
3,743,521 - -0.4
3,743,521 - +0.2
3,743,545 + -1.2
3,743,593 - +0.1
3,743,695 + -0.7
3,743,702 - +0.0
3,743,761 + +0.6
3,743,789 - Dshi_3558 0.15 +0.2
3,743,951 - Dshi_3558 0.46 -3.2
3,743,995 + Dshi_3558 0.55 -0.7
3,744,015 - Dshi_3558 0.59 -0.7
3,744,109 + Dshi_3558 0.77 -0.5
3,744,175 + Dshi_3558 0.90 -2.0
3,744,185 + -0.6
3,744,187 + -0.7
3,744,187 + +0.0
3,744,193 - -0.2
3,744,207 + +0.5
3,744,234 + -1.3
3,744,265 + -0.4
3,744,265 + -1.0
3,744,326 + -0.0
3,744,615 + Dshi_3559 0.25 +0.4
3,744,644 - Dshi_3559 0.27 -0.7
3,744,671 + Dshi_3559 0.29 -0.5
3,744,681 + Dshi_3559 0.30 +0.8
3,744,689 - Dshi_3559 0.30 -0.6
3,744,695 + Dshi_3559 0.31 -0.0
3,744,782 - Dshi_3559 0.37 -0.3
3,744,793 + Dshi_3559 0.37 -0.3
3,744,970 + Dshi_3559 0.49 -0.0
3,744,970 + Dshi_3559 0.49 +0.3

Or see this region's nucleotide sequence