Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3549

Experiment: m.b. Phosphomycin 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_3548 and Dshi_3549 are separated by 92 nucleotidesDshi_3549 and Dshi_3550 are separated by 166 nucleotidesDshi_3550 and Dshi_3551 are separated by 64 nucleotides Dshi_3548: Dshi_3548 - ABC transporter related (RefSeq), at 3,729,973 to 3,731,778 _3548 Dshi_3549: Dshi_3549 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 3,731,871 to 3,733,085 _3549 Dshi_3550: Dshi_3550 - ubiquinone biosynthesis O-methyltransferase (RefSeq), at 3,733,252 to 3,733,998 _3550 Dshi_3551: Dshi_3551 - proline iminopeptidase (RefSeq), at 3,734,063 to 3,735,049 _3551 Position (kb) 3731 3732 3733 3734Strain fitness (log2 ratio) -2 -1 0 1at 3731.832 kb on + strandat 3731.861 kb on - strandat 3731.862 kb on + strandat 3731.869 kb on + strandat 3731.914 kb on + strandat 3732.032 kb on + strand, within Dshi_3549at 3732.096 kb on - strand, within Dshi_3549at 3732.239 kb on - strand, within Dshi_3549at 3732.299 kb on - strand, within Dshi_3549at 3732.329 kb on - strand, within Dshi_3549at 3732.462 kb on - strand, within Dshi_3549at 3732.473 kb on + strand, within Dshi_3549at 3732.494 kb on + strand, within Dshi_3549at 3732.539 kb on - strand, within Dshi_3549at 3732.547 kb on + strandat 3732.555 kb on - strand, within Dshi_3549at 3732.589 kb on - strand, within Dshi_3549at 3732.647 kb on + strand, within Dshi_3549at 3732.785 kb on - strand, within Dshi_3549at 3732.785 kb on - strand, within Dshi_3549at 3732.802 kb on + strand, within Dshi_3549at 3732.882 kb on - strand, within Dshi_3549at 3732.934 kb on + strand, within Dshi_3549at 3732.942 kb on - strand, within Dshi_3549at 3733.181 kb on - strandat 3733.203 kb on - strandat 3733.280 kb on - strandat 3733.979 kb on + strandat 3734.031 kb on - strandat 3734.050 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml
remove
3,731,832 + +0.0
3,731,861 - +0.1
3,731,862 + +0.7
3,731,869 + -0.3
3,731,914 + -0.4
3,732,032 + Dshi_3549 0.13 -1.8
3,732,096 - Dshi_3549 0.19 +0.6
3,732,239 - Dshi_3549 0.30 +0.2
3,732,299 - Dshi_3549 0.35 -1.8
3,732,329 - Dshi_3549 0.38 +0.6
3,732,462 - Dshi_3549 0.49 -1.7
3,732,473 + Dshi_3549 0.50 -0.2
3,732,494 + Dshi_3549 0.51 -0.8
3,732,539 - Dshi_3549 0.55 +0.8
3,732,547 + -1.1
3,732,555 - Dshi_3549 0.56 -0.2
3,732,589 - Dshi_3549 0.59 -0.4
3,732,647 + Dshi_3549 0.64 -0.5
3,732,785 - Dshi_3549 0.75 -0.8
3,732,785 - Dshi_3549 0.75 -0.9
3,732,802 + Dshi_3549 0.77 -0.2
3,732,882 - Dshi_3549 0.83 -1.3
3,732,934 + Dshi_3549 0.87 -0.2
3,732,942 - Dshi_3549 0.88 -1.2
3,733,181 - -0.7
3,733,203 - +0.2
3,733,280 - -1.7
3,733,979 + +0.7
3,734,031 - -0.0
3,734,050 + -0.3

Or see this region's nucleotide sequence