Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3415 and Dshi_3416 are separated by 51 nucleotides Dshi_3416 and Dshi_3417 are separated by 73 nucleotides Dshi_3417 and Dshi_3418 are separated by 10 nucleotides
Dshi_3415: Dshi_3415 - putative metalloendopeptidase, glycoprotease family (RefSeq), at 3,593,049 to 3,594,119
_3415
Dshi_3416: Dshi_3416 - Uroporphyrinogen III synthase HEM4 (RefSeq), at 3,594,171 to 3,594,887
_3416
Dshi_3417: Dshi_3417 - hypothetical protein (RefSeq), at 3,594,961 to 3,596,388
_3417
Dshi_3418: Dshi_3418 - HemY domain protein (RefSeq), at 3,596,399 to 3,597,907
_3418
Position (kb)
3594
3595
3596
3597 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3594.114 kb on + strand at 3594.146 kb on - strand at 3594.842 kb on - strand at 3594.885 kb on - strand at 3595.021 kb on + strand at 3595.021 kb on + strand at 3595.061 kb on - strand at 3595.201 kb on - strand, within Dshi_3417 at 3595.432 kb on + strand, within Dshi_3417 at 3595.440 kb on - strand, within Dshi_3417 at 3595.524 kb on + strand, within Dshi_3417 at 3595.564 kb on + strand, within Dshi_3417 at 3595.564 kb on - strand, within Dshi_3417 at 3595.909 kb on + strand, within Dshi_3417 at 3596.020 kb on + strand, within Dshi_3417 at 3596.117 kb on + strand, within Dshi_3417 at 3596.182 kb on - strand, within Dshi_3417 at 3596.237 kb on + strand, within Dshi_3417 at 3596.373 kb on + strand at 3596.832 kb on + strand, within Dshi_3418 at 3596.884 kb on + strand, within Dshi_3418 at 3597.273 kb on + strand, within Dshi_3418
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 3,594,114 + -0.6 3,594,146 - +1.2 3,594,842 - +0.4 3,594,885 - +0.5 3,595,021 + -1.1 3,595,021 + -3.0 3,595,061 - -2.8 3,595,201 - Dshi_3417 0.17 -0.9 3,595,432 + Dshi_3417 0.33 +0.9 3,595,440 - Dshi_3417 0.34 -2.1 3,595,524 + Dshi_3417 0.39 -0.8 3,595,564 + Dshi_3417 0.42 -0.2 3,595,564 - Dshi_3417 0.42 -1.6 3,595,909 + Dshi_3417 0.66 -1.3 3,596,020 + Dshi_3417 0.74 -1.3 3,596,117 + Dshi_3417 0.81 -0.4 3,596,182 - Dshi_3417 0.86 -1.6 3,596,237 + Dshi_3417 0.89 -0.4 3,596,373 + -0.6 3,596,832 + Dshi_3418 0.29 -2.5 3,596,884 + Dshi_3418 0.32 -1.1 3,597,273 + Dshi_3418 0.58 -2.6
Or see this region's nucleotide sequence