Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3097 and Dshi_3098 are separated by 35 nucleotides Dshi_3098 and Dshi_3099 overlap by 4 nucleotides Dshi_3099 and Dshi_3100 are separated by 16 nucleotides
Dshi_3097: Dshi_3097 - glutamate--cysteine ligase (RefSeq), at 3,264,516 to 3,265,886
_3097
Dshi_3098: Dshi_3098 - hypothetical protein (RefSeq), at 3,265,922 to 3,266,470
_3098
Dshi_3099: Dshi_3099 - protein of unknown function DUF558 (RefSeq), at 3,266,467 to 3,267,216
_3099
Dshi_3100: Dshi_3100 - 4-hydroxybenzoate polyprenyl transferase (RefSeq), at 3,267,233 to 3,268,201
_3100
Position (kb)
3266
3267
3268 Strain fitness (log2 ratio)
-1
0
1 at 3265.898 kb on - strand at 3266.332 kb on - strand, within Dshi_3098 at 3266.332 kb on - strand, within Dshi_3098 at 3266.401 kb on + strand, within Dshi_3098 at 3266.401 kb on + strand, within Dshi_3098 at 3266.401 kb on + strand, within Dshi_3098 at 3266.409 kb on - strand, within Dshi_3098 at 3266.506 kb on - strand at 3266.572 kb on - strand, within Dshi_3099 at 3266.711 kb on + strand, within Dshi_3099 at 3266.972 kb on - strand, within Dshi_3099 at 3266.998 kb on - strand, within Dshi_3099 at 3267.010 kb on - strand, within Dshi_3099 at 3267.070 kb on + strand, within Dshi_3099 at 3267.095 kb on + strand, within Dshi_3099 at 3267.185 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 3,265,898 - +0.0 3,266,332 - Dshi_3098 0.75 +1.2 3,266,332 - Dshi_3098 0.75 +0.2 3,266,401 + Dshi_3098 0.87 -0.6 3,266,401 + Dshi_3098 0.87 -0.1 3,266,401 + Dshi_3098 0.87 +0.0 3,266,409 - Dshi_3098 0.89 +0.3 3,266,506 - -0.0 3,266,572 - Dshi_3099 0.14 -0.7 3,266,711 + Dshi_3099 0.33 +0.4 3,266,972 - Dshi_3099 0.67 -1.1 3,266,998 - Dshi_3099 0.71 -0.0 3,267,010 - Dshi_3099 0.72 +0.6 3,267,070 + Dshi_3099 0.80 -0.0 3,267,095 + Dshi_3099 0.84 -0.8 3,267,185 - -0.6
Or see this region's nucleotide sequence